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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.84851 (19 seq.)
>W131158390
AQUA01000002
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
7469
7386
-
Ser
TGA
[ENA]
¡û
>WENV181836086
OGVJ01000569
[OGVJ] freshwater metagenome; freshwater
2728
2811
+
Ser
TGA
[ENA]
¢þ
>WENV181838103
OGVM01006811
[OGVM] freshwater metagenome; freshwater
523
606
+
Ser
TGA
[ENA]
¢þ
>WENV181843285
OGVU01006394
[OGVU] freshwater metagenome; freshwater
544
461
-
Ser
TGA
[ENA]
¢þ
>WENV181848977
OGVZ01038997
[OGVZ] freshwater metagenome; freshwater
151
234
+
Ser
TGA
[ENA]
¢þ
>WENV181851296
OGWE01020327
[OGWE] freshwater metagenome; freshwater
486
569
+
Ser
TGA
[ENA]
¢þ
>WENV181853386
OGWI01003391
[OGWI] freshwater metagenome; freshwater
642
725
+
Ser
TGA
[ENA]
¢þ
>WENV181855634
OGWM01000171
[OGWM] freshwater metagenome; freshwater
4472
4555
+
Ser
TGA
[ENA]
¢þ
>WENV170622966
FUWD013129669
[FUWD] metagenome; unknown
98
181
+
Ser
TGA
[ENA]
¢þ
>WENV170631200
FUWD013342779
[FUWD] metagenome; unknown
98
181
+
Ser
TGA
[ENA]
¢þ
>C181018647
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
253528
253611
+
Ser
TGA
-
¡û
>C181020896
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
1300712
1300629
-
Ser
TGA
-
¡û
>C181020970
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
1308130
1308047
-
Ser
TGA
-
¡û
>C181021006
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
1298171
1298088
-
Ser
TGA
-
¡û
>C181021042
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
1287968
1287885
-
Ser
TGA
-
¡û
>C181021079
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
1282573
1282490
-
Ser
TGA
-
¡û
>C181021154
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
1286944
1286861
-
Ser
TGA
-
¡û
>C181021190
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
1281421
1281338
-
Ser
TGA
-
¡û
>C181021304
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
1223953
1223870
-
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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