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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.84975 (88 seq.)
>W131010445
AHYM01000013
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
101034
100945
-
Leu
TAA
[ENA]
¡û
>W131037518
AMFD01000013
Bacillota
Lactococcus garvieae I113 [AMFD]
93378
93289
-
Leu
TAA
[ENA]
¡û
>W131037574
AMFE01000065
Bacillota
Lactococcus garvieae Tac2 [AMFE]
9241
9154
-
Leu
TAA
[ENA]
¡û
>W131044519
AMQS01000046
Bacillota
Lactococcus garvieae DCC43 [AMQS]
8910
8821
-
Leu
TAA
[ENA]
¡û
>W1711006254
LQOE01000087
Bacillota
Lactococcus sp. DD01 [LQOE]
37
126
+
Leu
TAA
[ENA]
¡û
>W1711228325
LXWL01000009
Bacillota
Lactococcus garvieae [LXWL]
239396
239307
-
Leu
TAA
[ENA]
¡û
>W131202421
ASWT01000002
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
1073
1162
+
Leu
TAA
[ENA]
¡û
>W1711744874
MUIZ01000005
Bacillota
Lactococcus petauri 159469 [MUIZ]
223928
223839
-
Leu
TAA
[ENA]
¡û
>W1711942794
NBBK01000022
Bacillota
Lactococcus garvieae [NBBK]
8927
8838
-
Leu
TAA
[ENA]
¡û
>W141096203
AVFE01000015
Bacillota
Lactococcus garvieae TRF1 [AVFE]
45206
45117
-
Leu
TAA
[ENA]
¡û
>WENV182518525
OIWP01001043
[OIWP] human gut metagenome; faeces
36472
36385
-
Leu
TAA
[ENA]
¡û
>WENV183511399
OMJG01000186
[OMJG] food metagenome; Cotija cheese
92
180
+
Leu
TAA
[ENA]
¡û
>WENV170547772
CXTS01000594
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
197
108
-
Leu
TAA
[ENA]
¡û
>WENV170548326
CXUD01001401
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
303
214
-
Leu
TAA
[ENA]
¡û
>WENV170549760
CXVH01002489
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
198
109
-
Leu
TAA
[ENA]
¡û
>WENV170549796
CXVI01001225
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
268
181
-
Leu
TAA
[ENA]
¡û
>C181001709
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1355926
1356014
+
Leu
TAA
-
¡û
>C191044539
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1821070
1820982
-
Leu
TAA
-
¡û
>W1910641577
LTDA01000020
Bacillota
Lactococcus garvieae KS1546 [LTDA]
81
169
+
Leu
TAA
[ENA]
¡û
>W1810010482
BFFO01000003
Bacillota
Lactococcus termiticola NtB2 [BFFO]
219185
219100
-
Leu
TAA
[ENA]
¡û
>W1810907553
QVHV01000002
Bacillota
Lactococcus petauri AM13-9 [QVHV]
222901
222813
-
Leu
TAA
[ENA]
¡û
>W2010145333
BLXU01000008
Bacillota
Lactococcus garvieae lg38 [BLXU]
125102
125014
-
Leu
TAA
[ENA]
¡û
>W2010259170
CABJEF020000002
Bacillota
Lactococcus garvieae [CABJEF]
222901
222813
-
Leu
TAA
[ENA]
¡û
>W2010632777
JABTTD010000011
Bacillota
Lactococcus petauri LZys1 [JABTTD]
704
792
+
Leu
TAA
[ENA]
¡û
>W2010786203
LTDA01000020
Bacillota
Lactococcus garvieae KS1546 [LTDA]
81
169
+
Leu
TAA
[ENA]
¡û
>W2011490922
RSFD01000028
Bacillota
Lactococcus garvieae RTCLI04 [RSFD]
94633
94546
-
Leu
TAA
[ENA]
¡û
>W2011543980
SDHG01000009
Bacillota
Lactococcus petauri DB43829 [SDHG]
29103
29015
-
Leu
TAA
[ENA]
¡û
>W2011544017
SDHH01000005
Bacillota
Lactococcus garvieae TILSE6 [SDHH]
136041
135953
-
Leu
TAA
[ENA]
¡û
>W2011544060
SDHI01000002
Bacillota
Lactococcus petauri DB22928 [SDHI]
732
820
+
Leu
TAA
[ENA]
¡û
>W2011544125
SDHJ01000017
Bacillota
Lactococcus garvieae DB24910 [SDHJ]
35021
34933
-
Leu
TAA
[ENA]
¡û
>W2011544167
SDHK01000014
Bacillota
Lactococcus petauri DB44798 [SDHK]
733
821
+
Leu
TAA
[ENA]
¡û
>W2011544222
SDHL01000015
Bacillota
Lactococcus petauri FISH1 [SDHL]
114
202
+
Leu
TAA
[ENA]
¡û
>W2011544256
SDHM01000002
Bacillota
Lactococcus petauri GRT2 [SDHM]
240258
240170
-
Leu
TAA
[ENA]
¡û
>W2011544310
SDHN01000005
Bacillota
Lactococcus garvieae CT2 [SDHN]
168317
168229
-
Leu
TAA
[ENA]
¡û
>W2011544385
SDHO01000025
Bacillota
Lactococcus garvieae FISHB [SDHO]
4924
4837
-
Leu
TAA
[ENA]
¡û
>W2011544413
SDHP01000006
Bacillota
Lactococcus garvieae TILSE2 [SDHP]
736
824
+
Leu
TAA
[ENA]
¡û
>W2011544465
SDHQ01000014
Bacillota
Lactococcus garvieae DM12426 [SDHQ]
44522
44434
-
Leu
TAA
[ENA]
¡û
>W2011602713
SIVY01000022
Bacillota
Lactococcus petauri LG_SAV_20 [SIVY]
732
820
+
Leu
TAA
[ENA]
¡û
>W2012206281
VXKD01000039
Bacillota
Lactococcus garvieae subsp. garvieae CCUG 32208T [VXKD]
132016
131928
-
Leu
TAA
[ENA]
¡û
>W2110068670
BOVO01000007
Bacillota
Lactococcus garvieae subsp. bovis LMG 30663 [BOVO]
101367
101279
-
Leu
TAA
[ENA]
¡û
>W2110068728
BOVP01000005
Bacillota
Lactococcus formosensis NBRC 109475 [BOVP]
731
819
+
Leu
TAA
[ENA]
¡û
>W2110344963
JADMXE010000004
Bacillota
Lactococcus garvieae 1001287H_170206_H11 [JADMXE]
223159
223072
-
Leu
TAA
[ENA]
¡û
>W2110369001
JADPGL010000005
Bacillota
Lactococcus petauri 1001095IJ_161003_C7 [JADPGL]
220952
220864
-
Leu
TAA
[ENA]
¡û
>W2110369603
JADPHA010000013
Bacillota
Lactococcus petauri 1001713B170214_170313_F10 [JADPHA]
734
822
+
Leu
TAA
[ENA]
¡û
>W2110437311
JAEOAS010000002
Bacillota
Lactococcus petauri H10 [JAEOAS]
37
125
+
Leu
TAA
[ENA]
¡û
>W2110583788
JAGYXD010000004
Bacillota
Lactococcus garvieae INF126 [JAGYXD]
250626
250539
-
Leu
TAA
[ENA]
¡û
>W2110583852
JAGYXE010000032
Bacillota
Lactococcus petauri INF110 [JAGYXE]
23790
23702
-
Leu
TAA
[ENA]
¡û
>C211210908
CP065637
Bacillota
Lactococcus garvieae FDAARGOS_929 [CP065637]
493769
493857
+
Leu
TAA
-
¡û
>C211212730
CP065691
Bacillota
Lactococcus garvieae FDAARGOS_893 [CP065691]
1611078
1610990
-
Leu
TAA
-
¡û
>C211219714
CP066003
Bacillota
Lactococcus garvieae FDAARGOS_1002 [CP066003]
1182648
1182736
+
Leu
TAA
-
¡û
>C211221992
CP066074
Bacillota
Lactococcus garvieae FDAARGOS_1062 [CP066074]
1857735
1857648
-
Leu
TAA
-
¡û
>C211222290
CP066087
Bacillota
Lactococcus garvieae FDAARGOS_1063 [CP066087]
1250983
1251071
+
Leu
TAA
-
¡û
>C211289047
CP071285
Bacillota
Lactococcus garvieae LG728 [CP071285]
1817403
1817316
-
Leu
TAA
-
¡û
>C211289106
CP071290
Bacillota
Lactococcus garvieae LG791 [CP071290]
1761015
1760927
-
Leu
TAA
-
¡û
>C211289165
CP071293
Bacillota
Lactococcus sp. LG1074 [CP071293]
1821830
1821742
-
Leu
TAA
-
¡û
>C211289227
CP071295
Bacillota
Lactococcus sp. LG1267 [CP071295]
305275
305187
-
Leu
TAA
-
¡û
>C211289281
CP071300
Bacillota
Lactococcus sp. LG592 [CP071300]
1973233
1973145
-
Leu
TAA
-
¡û
>C211289343
CP071301
Bacillota
Lactococcus sp. LG606 [CP071301]
1596870
1596782
-
Leu
TAA
-
¡û
>C211408063
CP084377
Bacillota
Lactococcus garvieae Lg-Granada [CP084377]
1746096
1746183
+
Leu
TAA
-
¡û
>C231024850
AP026069
Bacillota
Lactococcus garvieae MS210922A [AP026069]
1855045
1854958
-
Leu
TAA
-
¡û
>C231034148
CP028386
Bacillota
Lactococcus garvieae IBB3403 [CP028386]
2035617
2035530
-
Leu
TAA
-
¡û
>W1510060211
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
1320078
1320167
+
Leu
TAA
[ENA]
¡û
>W1510060328
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
1320078
1320167
+
Leu
TAA
[ENA]
¡û
>C231227697
CP086394
Bacillota
Lactococcus garvieae subsp. garvieae B18 [CP086394]
1890691
1890604
-
Leu
TAA
-
¡û
>C231227756
CP086395
Bacillota
Lactococcus formosensis I4/6O [CP086395]
2140157
2140069
-
Leu
TAA
-
¡û
>C231227816
CP086401
Bacillota
Lactococcus petauri LG4 [CP086401]
2263382
2263294
-
Leu
TAA
-
¡û
>C231230535
CP086595
Bacillota
Lactococcus petauri LG26 [CP086595]
2380745
2380657
-
Leu
TAA
-
¡û
>C231353089
CP094882
Bacillota
Lactococcus petauri B1726 [CP094882]
1951549
1951461
-
Leu
TAA
-
¡û
>W2110761214
QSNN01000001
Bacillota
Lactococcus petauri RJAA.1 [QSNN]
56
144
+
Leu
TAA
[ENA]
¡û
>C231519408
CP109635
Bacillota
Lactococcus garvieae Alexii-11_2 [CP109635]
1847167
1847079
-
Leu
TAA
-
¡û
>C231519460
CP109636
Bacillota
Lactococcus garvieae Alexii-6_2 [CP109636]
1845411
1845323
-
Leu
TAA
-
¡û
>C231628010
CP120417
Bacillota
Lactococcus sp. bn62 [CP120417]
1961946
1961858
-
Leu
TAA
-
¡û
>W2110783084
WIVG01000049
Bacillota
Lactococcus garvieae EP01 [WIVG]
12525
12437
-
Leu
TAA
[ENA]
¡û
>C241103689
CP045924
Bacillota
Lactococcus petauri CF11 [CP045924]
1850964
1850876
-
Leu
TAA
-
¡û
>C241278511
CP127854
Bacillota
Lactococcus petauri GB97 [CP127854]
2201642
2201554
-
Leu
TAA
-
¡û
>C242000046
AP027275
Bacillota
Lactococcus formosensis MS200408A [AP027275]
1844746
1844658
-
Leu
TAA
-
¡û
>C11112709
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1805274
1805185
-
Leu
TAA
[Ensembl]
¡û
>C11112769
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1819103
1819014
-
Leu
TAA
[Ensembl]
¡û
>W1511314665
JPUJ01000002
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
181775
181686
-
Leu
TAA
[ENA]
¡û
>W11157443
AFCC01000007
Bacillota
Lactococcus garvieae 21881 [AFCC]
37
126
+
Leu
TAA
[ENA]
¡û
>W11157491
AFCD01000005
Bacillota
Lactococcus garvieae 8831 [AFCD]
36
125
+
Leu
TAA
[ENA]
¡û
>W11162742
AFHF01000005
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
4787
4876
+
Leu
TAA
[ENA]
¡û
>W121016378
AGQX01000090
Bacillota
Lactococcus garvieae TB25 [AGQX]
29045
28956
-
Leu
TAA
[ENA]
¡û
>W121016425
AGQY01000137
Bacillota
Lactococcus garvieae LG9 [AGQY]
6591
6502
-
Leu
TAA
[ENA]
¡û
>W121081188
AKFO01000004
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
92
179
+
Leu
TAA
[ENA]
¡û
>W1610856904
LQOE01000087
Bacillota
Lactococcus sp. DD01 [LQOE]
37
126
+
Leu
TAA
[ENA]
¡û
>W1611012242
LXWL01000009
Bacillota
Lactococcus garvieae [LXWL]
239396
239307
-
Leu
TAA
[ENA]
¡û
>W1710568208
FOTJ01000023
Bacillota
Lactococcus garvieae [FOTJ]
906
993
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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