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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.85317 (17 seq.)
>W131104562
APCS01000001
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
72293
72378
+
Leu
TAG
[ENA]
¡û
>C007966
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
936835
936750
-
Leu
TAG
[Ensembl]
¡û
>WENV180232178
OBCO01000166
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
87440
87355
-
Leu
TAG
[ENA]
¢þ
>WENV180233492
OBCP01000657
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
1515
1430
-
Leu
TAG
[ENA]
¢þ
>WENV180569857
OCLR01000605
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
4602
4517
-
Leu
TAG
[ENA]
¢þ
>WENV180570804
OCLS01000613
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
4622
4537
-
Leu
TAG
[ENA]
¢þ
>WENV180571548
OCLT01000163
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
87440
87355
-
Leu
TAG
[ENA]
¢þ
>WENV180573771
OCLW01000157
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
87440
87355
-
Leu
TAG
[ENA]
¢þ
>WENV180639841
OCRL01000158
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
87440
87355
-
Leu
TAG
[ENA]
¢þ
>WENV180640770
OCRM01000161
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
87440
87355
-
Leu
TAG
[ENA]
¢þ
>W141154758
AXLL01000006
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
25352
25267
-
Leu
TAG
[ENA]
¡û
>C181196458
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
1360640
1360725
+
Leu
TAG
-
¡û
>W141561453
JHYL01000002
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
272857
272942
+
Leu
TAG
[ENA]
¡û
>W141702066
JMLF01000010
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
36237
36322
+
Leu
TAG
[ENA]
¡û
>C10105368
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
936835
936750
-
Leu
TAG
[Ensembl]
¡û
>C11107295
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
936835
936750
-
Leu
TAG
[Ensembl]
¡û
>C161082970
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
1790728
1790813
+
Leu
TAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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