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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.85327 (24 seq.)
>WENV170707612
LNAP01027269
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1427
1512
+
Leu
TAA
[ENA]
¢þ
>C181220968
LT897836
Gammaproteobacteria
Sodalis endosymbiont of Henestaris halophilus [LT897836]
1319257
1319173
-
Leu
TAA
-
¡û
>C191087434
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
3279523
3279438
-
Leu
TAA
-
¡û
>C191126471
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
3200668
3200583
-
Leu
TAA
-
¡û
>C191126547
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
3201365
3201280
-
Leu
TAA
-
¡û
>C191126624
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
3318906
3318821
-
Leu
TAA
-
¡û
>C191151813
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
972854
972769
-
Leu
TAA
-
¡û
>W141710723
JMPO01000108
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
152678
152593
-
Leu
TAA
[ENA]
¡û
>W141816173
JQJR01000004
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
134029
134114
+
Leu
TAA
[ENA]
¡û
>W1910282484
FRDB01000013
Gammaproteobacteria
Candidatus Sodalis sp. SoCistrobi [FRDB]
15373
15288
-
Leu
TAA
[ENA]
¡û
>W1910584932
JYDF01000066
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
31810
31895
+
Leu
TAA
[ENA]
¡û
>W1910584996
JYDG01000104
Gammaproteobacteria
Rahnella sp. AN3-3W3 [JYDG]
123638
123553
-
Leu
TAA
[ENA]
¡û
>W1910655784
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
197910
197995
+
Leu
TAA
[ENA]
¡û
>W1910696209
MEHU01000035
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
732805
732720
-
Leu
TAA
[ENA]
¡û
>W1911686123
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
2079773
2079858
+
Leu
TAA
[ENA]
¡û
>W1911693628
QLTF01000004
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
75249
75164
-
Leu
TAA
[ENA]
¡û
>W1911824522
QZWI01000001
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
430278
430193
-
Leu
TAA
[ENA]
¡û
>W1810149990
PITQ01000004
Gammaproteobacteria
Rahnella sp. AA [PITQ]
319637
319552
-
Leu
TAA
[ENA]
¡û
>W1810744622
QOVA01000020
Gammaproteobacteria
Edaphovirga cremea DSM 105170 [QOVA]
26932
26847
-
Leu
TAA
[ENA]
¡û
>C11118364
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
3253301
3253216
-
Leu
TAA
[Ensembl]
¡û
>W1511433739
JUHL01000006
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
356048
355963
-
Leu
TAA
[ENA]
¡û
>W1511433771
JUHM01000001
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
263184
263269
+
Leu
TAA
[ENA]
¡û
>C121009655
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
3250207
3250122
-
Leu
TAA
[Ensembl]
¡û
>C121012509
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
3317883
3317798
-
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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