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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.85470 (34 seq.)
>W131043750
AMPS01000047
Alphaproteobacteria
Acidocella sp. MX-AZ02 [AMPS]
12165
12079
-
Leu
CAG
[ENA]
¡û
>C171097481
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
972372
972286
-
Leu
CAG
-
¡û
>WENV180344011
OBLK01181514
[OBLK] soil metagenome; Clay
83
-1
-
Leu
CAG
[ENA]
¡û
>WENV170469595
CEVF01128078
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2051
1965
-
Leu
CAG
[ENA]
¡û
>WENV170649323
JRYC01000725
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
6877
6791
-
Leu
CAG
[ENA]
¡û
>WENV170779791
LZQR01000833
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
2849
2763
-
Leu
CAG
[ENA]
¡û
>W1910501818
FYAU01000029
Alphaproteobacteria
Stappia sp. TSB10P1A [FYAU]
340293
340207
-
Leu
CAG
[ENA]
¡û
>W1910501875
FYAV01000069
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
128233
128147
-
Leu
CAG
[ENA]
¡û
>W1910501905
FYAW01000019
Alphaproteobacteria
Stappia sp. P2PMeth1 [FYAW]
158138
158224
+
Leu
CAG
[ENA]
¡û
>W1810324327
PUDR01000004
Alphaproteobacteria
Pannonibacter carbonis Q4.6 [PUDR]
181778
181864
+
Leu
CAG
[ENA]
¡û
>W1810676654
QKMD01000017
Alphaproteobacteria
Novosphingobium sp. GV010 [QKMD]
116750
116836
+
Leu
CAG
[ENA]
¡û
>W2010421607
FYAV01000069
Alphaproteobacteria
Stappia sp. TSB10GB4 [FYAV]
128233
128147
-
Leu
CAG
[ENA]
¡û
>W2010583024
JAAZTM010000002
Alphaproteobacteria
Labrenzia sp. 5N [JAAZTM]
75273
75187
-
Leu
CAG
[ENA]
¡û
>W2010602476
JABGCB010000005
Alphaproteobacteria
Novosphingobium sp. SG751A [JABGCB]
80471
80385
-
Leu
CAG
[ENA]
¡û
>W2010686553
JACFXV010000044
Alphaproteobacteria
Stappia sp. F7233 [JACFXV]
103979
103893
-
Leu
CAG
[ENA]
¡û
>W2010699803
JACHFJ010000002
Alphaproteobacteria
Acidocella aromatica DSM 27026 [JACHFJ]
97685
97599
-
Leu
CAG
[ENA]
¡û
>W2010752335
JACMIA010000001
Alphaproteobacteria
Stappia sp. 28M-7 [JACMIA]
353685
353599
-
Leu
CAG
[ENA]
¡û
>W2012226991
WAJT01000002
Alphaproteobacteria
Labrenzia sp. CE80 [WAJT]
365361
365447
+
Leu
CAG
[ENA]
¡û
>W2110190480
JABVZR010000001
Alphaproteobacteria
Novosphingobium sp. GeG2 [JABVZR]
71784
71698
-
Leu
CAG
[ENA]
¡û
>W2110190481
JABVZR010000001
Alphaproteobacteria
Novosphingobium sp. GeG2 [JABVZR]
71518
71432
-
Leu
CAG
[ENA]
¡û
>W2110511701
JAFLNF010000004
Alphaproteobacteria
Roseibium sp. CAU 1637 [JAFLNF]
56858
56944
+
Leu
CAG
[ENA]
¡û
>W2110511702
JAFLNF010000004
Alphaproteobacteria
Roseibium sp. CAU 1637 [JAFLNF]
57128
57214
+
Leu
CAG
[ENA]
¡û
>W2110710033
JAIZDA010000008
Alphaproteobacteria
Novosphingobium sp. FKTRR1 [JAIZDA]
164141
164227
+
Leu
CAG
[ENA]
¡û
>C231536600
CP110774
Alphaproteobacteria
Acidocella sp. MX-AZ03 [CP110774]
887543
887629
+
Leu
CAG
-
¡û
>C241095718
CP045380
Alphaproteobacteria
Labrenzia sp. THAF35 [CP045380]
5880626
5880540
-
Leu
CAG
-
¡û
>C241114083
CP046908
Alphaproteobacteria
Stappia indica PHM037 [CP046908]
3393688
3393602
-
Leu
CAG
-
¡û
>C161037936
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
4588499
4588413
-
Leu
CAG
-
¡û
>W1610041031
BANC01000005
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
38606
38520
-
Leu
CAG
[ENA]
¡û
>W1610077002
BCZE01000036
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
82049
82135
+
Leu
CAG
[ENA]
¡û
>W1610077003
BCZE01000036
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
82316
82402
+
Leu
CAG
[ENA]
¡û
>W1710038229
BANC01000005
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
38606
38520
-
Leu
CAG
[ENA]
¡û
>W1710074691
BCZE01000036
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
82049
82135
+
Leu
CAG
[ENA]
¡û
>W1710074692
BCZE01000036
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
82316
82402
+
Leu
CAG
[ENA]
¡û
>W1710584182
FQVJ01000003
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [FQVJ]
38883
38797
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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