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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86049 (54 seq.)
>W1710861002
LMDI01000012
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
380308
380393
+
Tyr
GTA
[ENA]
¡û
>W1710861584
LMDS01000007
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1648
1563
-
Tyr
GTA
[ENA]
¡û
>W1710867059
LMHZ01000001
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
1848
1763
-
Tyr
GTA
[ENA]
¡û
>W1710893641
LNEY01000032
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
181504
181589
+
Tyr
GTA
[ENA]
¡û
>W1711082071
LSTO01000001
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
2426093
2426178
+
Tyr
GTA
[ENA]
¡û
>W1711343233
MCIC01000020
Betaproteobacteria
Hydrogenophaga sp. H7 [MCIC]
196761
196846
+
Tyr
GTA
[ENA]
¡û
>W131171387
ARGE01000028
Betaproteobacteria
Brachymonas chironomi DSM 19884 [ARGE]
107505
107590
+
Tyr
GTA
[ENA]
¡û
>C010369
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
3138409
3138324
-
Tyr
GTA
[Ensembl]
¡û
>C011133
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
3803948
3803863
-
Tyr
GTA
[Ensembl]
¡û
>WENV180017540
FSXF01000451
[FSXF] metagenome; soil
622
537
-
Tyr
GTA
[ENA]
¢þ
>WENV180018310
FSYV01000510
[FSYV] metagenome; soil
33210
33295
+
Tyr
GTA
[ENA]
¢þ
>WENV180032875
FTKD01002429
[FTKD] metagenome; soil
24223
24138
-
Tyr
GTA
[ENA]
¢þ
>WENV180035715
FTLB01001011
[FTLB] metagenome; soil
87
2
-
Tyr
GTA
[ENA]
¢þ
>W141003842
AEEC02000036
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
54836
54921
+
Tyr
GTA
[ENA]
¡û
>WENV180262975
OBEQ011432365
[OBEQ] groundwater metagenome; groundwater
498
583
+
Tyr
GTA
[ENA]
¢þ
>WENV180262984
OBEQ011433266
[OBEQ] groundwater metagenome; groundwater
1666
1751
+
Tyr
GTA
[ENA]
¢þ
>WENV180284871
OBID01143224
[OBID] metagenome; sludge
290
375
+
Tyr
GTA
[ENA]
¢þ
>WENV180298369
OBJA01301165
[OBJA] soil metagenome; sediment, water from around vicinity
232
317
+
Tyr
GTA
[ENA]
¢þ
>WENV180344719
OBLL01136447
[OBLL] soil metagenome; soil
105
20
-
Tyr
GTA
[ENA]
¢þ
>WENV181221661
OFCW01000407
[OFCW] microbial mat metagenome; Microbial Mat
8287
8372
+
Tyr
GTA
[ENA]
¢þ
>WENV181221861
OFCZ01000261
[OFCZ] metagenome; soil
2824
2739
-
Tyr
GTA
[ENA]
¢þ
>WENV183697809
OUNK010144574
[OUNK] metagenome; soil
581
496
-
Tyr
GTA
[ENA]
¢þ
>WENV183697876
OUNK010228191
[OUNK] metagenome; soil
117
202
+
Tyr
GTA
[ENA]
¢þ
>WENV183733371
PJTY01001400
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
7778
7863
+
Tyr
GTA
[ENA]
¢þ
>WENV183739003
PJUE01000861
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
4832
4917
+
Tyr
GTA
[ENA]
¢þ
>WENV183744284
PJUK01004678
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
1148
1233
+
Tyr
GTA
[ENA]
¢þ
>WENV170155110
CEOF01433624
[CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1643
1558
-
Tyr
GTA
[ENA]
¢þ
>WENV170558449
CXWL01071333
[CXWL] groundwater metagenome; biofilm material
4376
4461
+
Tyr
GTA
[ENA]
¢þ
>WENV170573132
FLYJ01000250
[FLYJ] hot springs metagenome; Sediment
162
77
-
Tyr
GTA
[ENA]
¢þ
>WENV170634598
FZPR01000343
[FZPR] metagenome; sediment
98
13
-
Tyr
GTA
[ENA]
¢þ
>WENV170691399
LFRM01395655
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
139
224
+
Tyr
GTA
[ENA]
¢þ
>WENV170708522
LNAP01091038
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
444
359
-
Tyr
GTA
[ENA]
¢þ
>WENV170868654
MDTB01165026
[MDTB] marine metagenome; seawater
187272
187187
-
Tyr
GTA
[ENA]
¢þ
>C191138954
CP035311
Betaproteobacteria
Janthinobacterium sp. 17J80-10 [CP035311]
2790
2705
-
Tyr
GTA
-
¡û
>C191154105
CP037867
Betaproteobacteria
Hydrogenophaga pseudoflava DSM 1084 [CP037867]
4513162
4513077
-
Tyr
GTA
-
¡û
>W1910548747
FZOT01000001
Betaproteobacteria
Noviherbaspirillum humi U15 [FZOT]
481
396
-
Tyr
GTA
[ENA]
¡û
>W1910700068
MESE01000010
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
565
480
-
Tyr
GTA
[ENA]
¡û
>W1911647594
QAJP01000003
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
507
422
-
Tyr
GTA
[ENA]
¡û
>W1911802789
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
3260153
3260068
-
Tyr
GTA
[ENA]
¡û
>W1911802908
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sedimenti K1S02-23 [QYUQ]
2800808
2800723
-
Tyr
GTA
[ENA]
¡û
>W1810400024
PYFP01000002
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
900664
900579
-
Tyr
GTA
[ENA]
¡û
>WENV028679
AACY021138598
Marine microbial communities from Global Ocean Sampling (GOS)
173
88
-
Tyr
GTA
[ENA]
>ENV09004068
ADIG01003442
Groundwater metagenome 4000601.lucy.pga.C1
181
266
+
Tyr
GTA
[ENA]
¡û
>W1511480630
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
730453
730538
+
Tyr
GTA
[ENA]
¡û
>C161059550
CP013692
Betaproteobacteria
Paucibacter sp. KCTC 42545 [CP013692]
5077245
5077330
+
Tyr
GTA
[Ensembl]
¡û
>WENV057471
AACY023295671
Marine microbial communities from Global Ocean Sampling (GOS)
1007
1092
+
Tyr
GTA
[ENA]
>W1610070390
BCTF01000015
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
148112
148197
+
Tyr
GTA
[ENA]
¡û
>W1610074401
BCWQ01000010
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
390
305
-
Tyr
GTA
[ENA]
¡û
>W1610723348
LMDI01000012
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
380308
380393
+
Tyr
GTA
[ENA]
¡û
>W1610723930
LMDS01000007
Betaproteobacteria
Rhizobacter sp. Root404 [LMDS]
1648
1563
-
Tyr
GTA
[ENA]
¡û
>W1610729405
LMHZ01000001
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
1848
1763
-
Tyr
GTA
[ENA]
¡û
>W1610753907
LNEY01000032
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
181504
181589
+
Tyr
GTA
[ENA]
¡û
>W1710067763
BCTF01000015
Betaproteobacteria
Hydrogenophaga flava NBRC 102514 [BCTF]
148112
148197
+
Tyr
GTA
[ENA]
¡û
>W1710071519
BCWQ01000010
Betaproteobacteria
Hydrogenophaga pseudoflava NBRC 102511 [BCWQ]
390
305
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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