This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86212 (24 seq.)
>W131158409
AQUA01000007
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
60981
61065
+
Leu
GAG
[ENA]
¡û
>W131183109
ARRO01000007
Actinomycetota
actinobacterium SCGC AAA027-M14 [ARRO]
54823
54737
-
Leu
GAG
[ENA]
¡û
>WENV181369100
OFQN01024655
[OFQN] freshwater metagenome; Freshwater Lake
439
355
-
Leu
GAG
[ENA]
¢þ
>WENV181838190
OGVM01017714
[OGVM] freshwater metagenome; freshwater
479
395
-
Leu
GAG
[ENA]
¢þ
>WENV181843160
OGVU01001717
[OGVU] freshwater metagenome; freshwater
684
768
+
Leu
GAG
[ENA]
¢þ
>WENV181856050
OGWM01013610
[OGWM] freshwater metagenome; freshwater
601
685
+
Leu
GAG
[ENA]
¢þ
>WENV020818
AACY020559051
Marine microbial communities from Global Ocean Sampling (GOS)
1210
1122
-
Leu
GAG
[ENA]
>WENV170606261
FUWD010638085
[FUWD] metagenome; unknown
88
4
-
Leu
GAG
[ENA]
¢þ
>C181018665
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
875247
875163
-
Leu
GAG
-
¡û
>C181020881
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
682122
682206
+
Leu
GAG
-
¡û
>C181020955
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
688013
688097
+
Leu
GAG
-
¡û
>C181020991
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
678001
678085
+
Leu
GAG
-
¡û
>C181021027
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
651657
651741
+
Leu
GAG
-
¡û
>C181021139
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
667942
668026
+
Leu
GAG
-
¡û
>C181021175
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
648240
648324
+
Leu
GAG
-
¡û
>C181021289
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
626839
626923
+
Leu
GAG
-
¡û
>WENV045096
AACY022483117
Marine microbial communities from Global Ocean Sampling (GOS)
464
376
-
Leu
GAG
[ENA]
>WENV049166
AACY022773664
Marine microbial communities from Global Ocean Sampling (GOS)
756
668
-
Leu
GAG
[ENA]
>WENV049209
AACY022776038
Marine microbial communities from Global Ocean Sampling (GOS)
841
753
-
Leu
GAG
[ENA]
>WENV005974
AACY020165911
Marine microbial communities from Global Ocean Sampling (GOS)
733
645
-
Leu
GAG
[ENA]
>WENV006078
AACY020167920
Marine microbial communities from Global Ocean Sampling (GOS)
3961
3873
-
Leu
GAG
[ENA]
>WENV061674
AACY023437077
Marine microbial communities from Global Ocean Sampling (GOS)
976
888
-
Leu
GAG
[ENA]
>WENV006627
AACY020177276
Marine microbial communities from Global Ocean Sampling (GOS)
1946
1860
-
Leu
GAG
[ENA]
>WENV006967
AACY020182428
Marine microbial communities from Global Ocean Sampling (GOS)
1065
1151
+
Leu
GAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK