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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86856 (8 seq.)
>WENV181239243
OFFD01000283
[OFFD] mouse gut metagenome; faeces
5457
5544
+
Leu
TAA
[ENA]
¡û
>WENV181247941
OFFL01000354
[OFFL] mouse gut metagenome; faeces
47228
47141
-
Leu
TAA
[ENA]
¡û
>WENV181253781
OFFQ01053087
[OFFQ] mouse gut metagenome; faeces
373
460
+
Leu
TAA
[ENA]
¡û
>WENV181265563
OFGB01000249
[OFGB] mouse gut metagenome; faeces
38853
38766
-
Leu
TAA
[ENA]
¡û
>WENV181268130
OFGD01000756
[OFGD] mouse gut metagenome; faeces
1045
1132
+
Leu
TAA
[ENA]
¡û
>WENV181270436
OFGF01000089
[OFGF] mouse gut metagenome; faeces
81270
81183
-
Leu
TAA
[ENA]
¡û
>WENV181283964
OFGQ01057477
[OFGQ] mouse gut metagenome; faeces
372
285
-
Leu
TAA
[ENA]
¡û
>WENV183501191
OMGR01022673
[OMGR] human gut metagenome; human gut
302
215
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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