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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86859 (19 seq.)
>W1711462702
MJHW01000008
Bacillota
Roseburia sp. 831b [MJHW]
257710
257624
-
Ser
TGA
[ENA]
¡û
>WENV180956447
ODUK01001311
[ODUK] human metagenome; G_DNA_Stool
22598
22684
+
Ser
TGA
[ENA]
¡û
>WENV181240311
OFFE01000789
[OFFE] mouse gut metagenome; faeces
737
650
-
Ser
TGA
[ENA]
¡û
>WENV181241353
OFFF01000662
[OFFF] mouse gut metagenome; faeces
24520
24607
+
Ser
TGA
[ENA]
¡û
>WENV181243698
OFFH01000595
[OFFH] mouse gut metagenome; faeces
214
127
-
Ser
TGA
[ENA]
¡û
>WENV181245657
OFFJ01000820
[OFFJ] mouse gut metagenome; faeces
24534
24620
+
Ser
TGA
[ENA]
¡û
>WENV181254374
OFFR01005230
[OFFR] mouse gut metagenome; faeces
3906
3993
+
Ser
TGA
[ENA]
¡û
>WENV181269038
OFGE01000311
[OFGE] mouse gut metagenome; faeces
55265
55352
+
Ser
TGA
[ENA]
¡û
>WENV181270887
OFGF01002073
[OFGF] mouse gut metagenome; faeces
179
93
-
Ser
TGA
[ENA]
¡û
>WENV181272053
OFGG01001690
[OFGG] mouse gut metagenome; faeces
13374
13461
+
Ser
TGA
[ENA]
¡û
>WENV181280630
OFGO01000911
[OFGO] mouse gut metagenome; faeces
394
307
-
Ser
TGA
[ENA]
¡û
>WENV181281881
OFGP01000930
[OFGP] mouse gut metagenome; faeces
24530
24617
+
Ser
TGA
[ENA]
¡û
>WENV181284672
OFGR01004172
[OFGR] mouse gut metagenome; faeces
179
93
-
Ser
TGA
[ENA]
¡û
>WENV181298971
OFHM01000479
[OFHM] mouse gut metagenome; faeces
179
93
-
Ser
TGA
[ENA]
¡û
>WENV181303601
OFHP01040426
[OFHP] mouse gut metagenome; faeces
705
792
+
Ser
TGA
[ENA]
¡û
>WENV182512869
OIWL01033814
[OIWL] human gut metagenome; faeces
190
104
-
Ser
TGA
[ENA]
¡û
>W2011366706
RAZG01000024
Bacillota
Roseburia sp. 1XD42-69 [RAZG]
609
522
-
Ser
TGA
[ENA]
¡û
>W2110245689
JACOPH010000023
Bacillota
Roseburia sp. BX1005 [JACOPH]
22449
22535
+
Ser
TGA
[ENA]
¡û
>C241322899
CP135162
Bacillota
Roseburia sp. 831b [CP135162]
2289138
2289052
-
Ser
TGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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