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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86865 (6 seq.)
>WENV181286058
OFGU01032857
[OFGU] soil metagenome; Clay
157
245
+
Leu
TAA
[ENA]
¡û
>WENV181286441
OFGV01041795
[OFGV] soil metagenome; Clay
357
269
-
Leu
TAA
[ENA]
¡û
>WENV181288173
OFGY01020272
[OFGY] soil metagenome; Clay
401
313
-
Leu
TAA
[ENA]
¡û
>WENV181291789
OFHD01001106
[OFHD] soil metagenome; Clay
3508
3420
-
Leu
TAA
[ENA]
¡û
>WENV181293213
OFHG01000341
[OFHG] soil metagenome; Clay
2530
2442
-
Leu
TAA
[ENA]
¡û
>WENV181294396
OFHH01001169
[OFHH] soil metagenome; Clay
1555
1467
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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