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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86900 (7 seq.)
>WENV181184634
OEKN01000118
[OEKN] metagenome; 1998
1110
1022
-
Tyr
GTA
[ENA]
¡û
>WENV181186126
OEMO01000757
[OEMO] metagenome; 1998
414
326
-
Tyr
GTA
[ENA]
¡û
>WENV181192530
OEPS010748167
[OEPS] soil metagenome; soil
125
213
+
Tyr
GTA
[ENA]
¡û
>WENV170564164
CZKD01000070
[CZKD] soil metagenome genome assembly CiPEHR-AK-2010-FBin.3, contig:; soil
46905
46993
+
Tyr
GTA
[ENA]
¡û
>WENV170564329
CZKJ01000043
[CZKJ] soil metagenome genome assembly CiPEHR-AK-2010-FBin.11, contig:; soil
41230
41318
+
Tyr
GTA
[ENA]
¡û
>WENV170564553
CZKR01000145
[CZKR] soil metagenome genome assembly CiPEHR-AK-2010-FBin.7, contig:; soil
81657
81745
+
Tyr
GTA
[ENA]
¡û
>W1810046985
OKRE01000145
Acidobacteriota
Candidatus Sulfotelmatobacter sp. SbA7 SbA7 Peat soil MAG SbA7 [OKRE]
473
385
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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