This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86909 (25 seq.)
>C171046531
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
10945788
10945875
+
Ser
GGA
-
¡û
>WENV180019811
FTCO01001586
[FTCO] metagenome; soil
1988
2073
+
Ser
GGA
[ENA]
¢þ
>W141073139
ASRX01000066
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
73374
73287
-
Ser
GGA
[ENA]
¡û
>C08008933
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
10308322
10308237
-
Ser
GGA
[Ensembl]
¡û
>C181012502
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
11924497
11924412
-
Ser
GGA
-
¡û
>C191010030
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
8591838
8591753
-
Ser
GGA
-
¡û
>C191010083
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
11935781
11935694
-
Ser
GGA
-
¡û
>C151091959
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
1614007
1614094
+
Ser
GGA
-
¡û
>C131010769
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
12099265
12099178
-
Ser
GGA
[Ensembl]
¡û
>W1610520375
JELX01000757
Myxococcota
Sorangium cellulosum [JELX]
1767
1680
-
Ser
GGA
[ENA]
¡û
>W1610520430
JELY01001556
Myxococcota
Sorangium cellulosum [JELY]
3376
3291
-
Ser
GGA
[ENA]
¡û
>W1610520471
JELZ01000528
Myxococcota
Sorangium cellulosum [JELZ]
3225
3140
-
Ser
GGA
[ENA]
¡û
>W1610520529
JEMA01000683
Myxococcota
Sorangium cellulosum [JEMA]
5745
5830
+
Ser
GGA
[ENA]
¡û
>W1610520607
JEMB01003275
Myxococcota
Sorangium cellulosum [JEMB]
389
474
+
Ser
GGA
[ENA]
¡û
>W1610520660
JEMC01004023
Myxococcota
Sorangium cellulosum [JEMC]
266
353
+
Ser
GGA
[ENA]
¡û
>W1610520690
JEMD01001714
Myxococcota
Sorangium cellulosum [JEMD]
2155
2242
+
Ser
GGA
[ENA]
¡û
>W1610520714
JEME01000489
Myxococcota
Sorangium cellulosum [JEME]
3385
3298
-
Ser
GGA
[ENA]
¡û
>W1710615853
JELX01000757
Myxococcota
Sorangium cellulosum [JELX]
1767
1680
-
Ser
GGA
[ENA]
¡û
>W1710615908
JELY01001556
Myxococcota
Sorangium cellulosum [JELY]
3376
3291
-
Ser
GGA
[ENA]
¡û
>W1710615949
JELZ01000528
Myxococcota
Sorangium cellulosum [JELZ]
3225
3140
-
Ser
GGA
[ENA]
¡û
>W1710616007
JEMA01000683
Myxococcota
Sorangium cellulosum [JEMA]
5745
5830
+
Ser
GGA
[ENA]
¡û
>W1710616085
JEMB01003275
Myxococcota
Sorangium cellulosum [JEMB]
389
474
+
Ser
GGA
[ENA]
¡û
>W1710616138
JEMC01004023
Myxococcota
Sorangium cellulosum [JEMC]
266
353
+
Ser
GGA
[ENA]
¡û
>W1710616168
JEMD01001714
Myxococcota
Sorangium cellulosum [JEMD]
2155
2242
+
Ser
GGA
[ENA]
¡û
>W1710616192
JEME01000489
Myxococcota
Sorangium cellulosum [JEME]
3385
3298
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK