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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86922 (53 seq.)
>WENV180335486
OBLG01000063
[OBLG] human gut metagenome; human gut
86246
86158
-
Ser
CGA
[ENA]
¡û
>WENV180545704
OCIU01000047
[OCIU] human gut metagenome; human gut
51013
51101
+
Ser
CGA
[ENA]
¡û
>WENV180613953
OCPY01000593
[OCPY] human gut metagenome; human gut
1134
1046
-
Ser
CGA
[ENA]
¡û
>WENV180615253
OCPZ01000638
[OCPZ] human gut metagenome; human gut
22510
22598
+
Ser
CGA
[ENA]
¡û
>WENV180615518
OCPZ01004289
[OCPZ] human gut metagenome; human gut
3995
4083
+
Ser
CGA
[ENA]
¡û
>WENV180867314
ODLK01000817
[ODLK] human metagenome; G_DNA_Stool
1669
1757
+
Ser
CGA
[ENA]
¡û
>WENV180965385
ODUP01000794
[ODUP] human metagenome; G_DNA_Stool
1668
1756
+
Ser
CGA
[ENA]
¡û
>WENV181337082
OFME01000408
[OFME] human gut metagenome; human gut
11205
11117
-
Ser
CGA
[ENA]
¡û
>WENV181366022
OFPS01000628
[OFPS] human gut metagenome; human gut
22260
22348
+
Ser
CGA
[ENA]
¡û
>WENV181417397
OGCM01000151
[OGCM] human gut metagenome; human gut
53517
53605
+
Ser
CGA
[ENA]
¡û
>WENV181593894
OGKT01014491
[OGKT] metagenome; Human gut stool
599
687
+
Ser
CGA
[ENA]
¡û
>WENV181630216
OGMQ01000023
[OGMQ] metagenome; Human gut stool
49701
49613
-
Ser
CGA
[ENA]
¡û
>WENV181663075
OGOH01005337
[OGOH] human gut metagenome; faeces
5507
5419
-
Ser
CGA
[ENA]
¡û
>WENV181668098
OGOL01000534
[OGOL] human gut metagenome; faeces
27742
27830
+
Ser
CGA
[ENA]
¡û
>WENV181703203
OGPJ01004480
[OGPJ] human gut metagenome; faeces
850
938
+
Ser
CGA
[ENA]
¡û
>WENV181709879
OGPN01007594
[OGPN] human gut metagenome; faeces
840
928
+
Ser
CGA
[ENA]
¡û
>WENV181712478
OGPQ01000111
[OGPQ] human gut metagenome; faeces
50715
50803
+
Ser
CGA
[ENA]
¡û
>WENV181751571
OGQQ01000034
[OGQQ] human gut metagenome; faeces
83216
83128
-
Ser
CGA
[ENA]
¡û
>WENV181777260
OGRH01000014
[OGRH] human gut metagenome; faeces
86629
86541
-
Ser
CGA
[ENA]
¡û
>WENV181829966
OGUO01000116
[OGUO] human gut metagenome; faeces
18955
19043
+
Ser
CGA
[ENA]
¡û
>WENV182043238
OHDP01002867
[OHDP] human gut metagenome; feces
3865
3777
-
Ser
CGA
[ENA]
¡û
>WENV182076548
OHFV01009365
[OHFV] human gut metagenome; feces
528
616
+
Ser
CGA
[ENA]
¡û
>WENV182158116
OHLY01001788
[OHLY] human gut metagenome; feces
6999
6911
-
Ser
CGA
[ENA]
¡û
>WENV182195199
OHPD01000688
[OHPD] human gut metagenome; feces
13059
13147
+
Ser
CGA
[ENA]
¡û
>WENV182273000
OHUI01006830
[OHUI] human gut metagenome; feces
1256
1344
+
Ser
CGA
[ENA]
¡û
>WENV182313247
OHXY01000597
[OHXY] human gut metagenome; feces
5994
6082
+
Ser
CGA
[ENA]
¡û
>WENV182323398
OHYP01007466
[OHYP] human gut metagenome; feces
90
2
-
Ser
CGA
[ENA]
¡û
>WENV182327878
OHZB01006736
[OHZB] human gut metagenome; feces
1308
1396
+
Ser
CGA
[ENA]
¡û
>WENV182357277
OIBS01034006
[OIBS] human gut metagenome; feces
16
104
+
Ser
CGA
[ENA]
¡û
>WENV182387031
OIDZ01021087
[OIDZ] human gut metagenome; feces
634
722
+
Ser
CGA
[ENA]
¡û
>WENV182395252
OIEL01000046
[OIEL] human gut metagenome; human gut
31373
31285
-
Ser
CGA
[ENA]
¡û
>WENV182532411
OIXA01001963
[OIXA] human gut metagenome; faeces
9233
9145
-
Ser
CGA
[ENA]
¡û
>WENV182669985
OJNK01003891
[OJNK] human gut metagenome; human gut
1147
1059
-
Ser
CGA
[ENA]
¡û
>WENV182707801
OJOY01009440
[OJOY] human gut metagenome; stool sample
1121
1033
-
Ser
CGA
[ENA]
¡û
>WENV182713929
OJPG01010144
[OJPG] human gut metagenome; stool sample
1625
1713
+
Ser
CGA
[ENA]
¡û
>WENV182716914
OJPK01000153
[OJPK] human gut metagenome; stool sample
21442
21530
+
Ser
CGA
[ENA]
¡û
>WENV182724338
OJPS01004165
[OJPS] human gut metagenome; stool sample
5849
5937
+
Ser
CGA
[ENA]
¡û
>WENV182757894
OJRI01000011
[OJRI] human gut metagenome; stool sample
50738
50826
+
Ser
CGA
[ENA]
¡û
>WENV182923063
OKUE01000427
[OKUE] human gut metagenome; feces
10128
10216
+
Ser
CGA
[ENA]
¡û
>WENV182928141
OKUN01018802
[OKUN] human gut metagenome; feces
861
949
+
Ser
CGA
[ENA]
¡û
>WENV182931428
OKUS01010408
[OKUS] human gut metagenome; feces
735
647
-
Ser
CGA
[ENA]
¡û
>WENV182933786
OKUW01002071
[OKUW] human gut metagenome; feces
1049
1137
+
Ser
CGA
[ENA]
¡û
>WENV183034454
OLFZ01000065
[OLFZ] human gut metagenome; faeces
22262
22350
+
Ser
CGA
[ENA]
¡û
>WENV183210630
OLQC01003385
[OLQC] human gut metagenome; faeces
7970
8058
+
Ser
CGA
[ENA]
¡û
>WENV183304309
OLSQ01028676
[OLSQ] human gut metagenome; faeces
462
550
+
Ser
CGA
[ENA]
¡û
>WENV183372874
OLXX01001514
[OLXX] human gut metagenome; feces
1493
1581
+
Ser
CGA
[ENA]
¡û
>WENV183398525
OLZO01005724
[OLZO] human gut metagenome; feces
979
891
-
Ser
CGA
[ENA]
¡û
>WENV183415165
OMAQ01003092
[OMAQ] human gut metagenome; feces
3907
3819
-
Ser
CGA
[ENA]
¡û
>WENV183477742
OMFC01013464
[OMFC] human gut metagenome; feces
1574
1659
+
Ser
CGA
[ENA]
¡û
>WENV183479948
OMFI01001893
[OMFI] human gut metagenome; feces
1572
1660
+
Ser
CGA
[ENA]
¡û
>WENV183754915
PPYE01106142
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
25083
25171
+
Ser
CGA
[ENA]
¡û
>WENV170095874
CEAJ01022340
[CEAJ] gut metagenome; human stools
22286
22374
+
Ser
CGA
[ENA]
¡û
>W2010335551
CACYOP010000011
Bacillota
Ruminococcaceae bacterium [CACYOP]
22214
22126
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK