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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86922 (41 seq.)
>W1711377917
MDZH01000390
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
6521
6605
+
Leu
CAA
[ENA]
¡û
>W131063371
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
411755
411839
+
Leu
CAA
[ENA]
¡û
>W131087194
AOCI01000265
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
5412
5496
+
Leu
CAA
[ENA]
¡û
>W131203762
ASZQ01000197
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
8336
8252
-
Leu
CAA
[ENA]
¡û
>W1711603045
MOLN01000195
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
6297
6381
+
Leu
CAA
[ENA]
¡û
>W1711772032
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
1591844
1591757
-
Leu
CAA
[ENA]
¡û
>C171016647
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
3264858
3264774
-
Leu
CAA
-
¡û
>C171112081
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
2572796
2572712
-
Leu
CAA
-
¡û
>W141065552
AQPY01000122
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
5481
5397
-
Leu
CAA
[ENA]
¡û
>W141242374
CAIH01000180
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
19266
19182
-
Leu
CAA
[ENA]
¡û
>W141242396
CAII01000011
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
12632
12719
+
Leu
CAA
[ENA]
¡û
>W141242442
CAIJ01000115
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
11158
11071
-
Leu
CAA
[ENA]
¡û
>W141242482
CAIK01000087
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
627
543
-
Leu
CAA
[ENA]
¡û
>W141242518
CAIL01000050
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
2457
2370
-
Leu
CAA
[ENA]
¡û
>W141242549
CAIM01000067
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
6765
6678
-
Leu
CAA
[ENA]
¡û
>W141242614
CAIN01000258
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
6345
6429
+
Leu
CAA
[ENA]
¡û
>W141242652
CAIO01000362
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
356
269
-
Leu
CAA
[ENA]
¡û
>W141242687
CAIP01000194
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
6717
6801
+
Leu
CAA
[ENA]
¡û
>C08006371
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
3080517
3080430
-
Leu
CAA
[Ensembl]
¡û
>WENV182865805
OKRQ01002829
[OKRQ] freshwater metagenome; freshwater
1039
952
-
Leu
CAA
[ENA]
¢þ
>WENV170681018
LFEF01044014
[LFEF] freshwater metagenome; waterbloom
28757
28844
+
Leu
CAA
[ENA]
¢þ
>C181046157
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
798439
798523
+
Leu
CAA
-
¡û
>C191007284
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
988932
988848
-
Leu
CAA
-
¡û
>W1910020373
BDSG01000161
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
5851
5935
+
Leu
CAA
[ENA]
¡û
>W1910020377
BDSM01000003
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
24500
24584
+
Leu
CAA
[ENA]
¡û
>W1910038642
BEIU01000001
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
512996
513080
+
Leu
CAA
[ENA]
¡û
>W1910038700
BEIV01000028
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
11320
11236
-
Leu
CAA
[ENA]
¡û
>W1910067371
BEYQ01000014
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
140520
140436
-
Leu
CAA
[ENA]
¡û
>W1910067395
BFAC01000004
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
350152
350236
+
Leu
CAA
[ENA]
¡û
>W1910142336
BIFY01000062
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
6459
6543
+
Leu
CAA
[ENA]
¡û
>W1910665577
MCIH01000167
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
18630
18714
+
Leu
CAA
[ENA]
¡û
>W1910768689
MOLZ01000184
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
9917
10001
+
Leu
CAA
[ENA]
¡û
>C151079378
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
3266835
3266751
-
Leu
CAA
[Ensembl]
¡û
>C151080720
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
2689021
2688934
-
Leu
CAA
-
¡û
>W1510013646
BBPA01000073
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
46366
46279
-
Leu
CAA
[ENA]
¡û
>W1610550840
JXYX01000019
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
7873
7960
+
Leu
CAA
[ENA]
¡û
>W1710004736
AJHB01001003
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
96
12
-
Leu
CAA
[ENA]
¡û
>W1710005085
AJUS01001063
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
96
12
-
Leu
CAA
[ENA]
¡û
>W1710005122
AJUT01000997
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
96
12
-
Leu
CAA
[ENA]
¡û
>W1710005158
AJUU01000987
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
96
12
-
Leu
CAA
[ENA]
¡û
>W1710660717
JXYX01000019
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
7873
7960
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK