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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.871074 (124 seq.)
>W131170027
ARFF01000016
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
24832
24905
+
Trp
CCA
[ENA]
¡û
>W131220008
ATZA01000004
Bacteroidota
Olivibacter sitiensis DSM 17696 [ATZA]
104505
104432
-
Trp
CCA
[ENA]
¡û
>W131229764
AUHA01000002
Bacteroidota
Daejeonella oryzae DSM 19973 [AUHA]
11930
11859
-
Trp
CCA
[ENA]
¡û
>WENV180034286
FTKP01123692
[FTKP] metagenome; soil
110
181
+
Trp
CCA
[ENA]
¡û
>WENV180284533
OBID01053190
[OBID] metagenome; sludge
149
78
-
Trp
CCA
[ENA]
¡û
>WENV180297855
OBJA01100980
[OBJA] soil metagenome; sediment, water from around vicinity
256
329
+
Trp
CCA
[ENA]
¡û
>WENV181167944
OEIU01111994
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
364
435
+
Trp
CCA
[ENA]
¡û
>WENV181368405
OFQL01003190
[OFQL] freshwater metagenome; Freshwater Lake
1213
1142
-
Trp
CCA
[ENA]
¡û
>WENV181369451
OFQP01002382
[OFQP] freshwater metagenome; Freshwater Lake
588
517
-
Trp
CCA
[ENA]
¡û
>WENV181369943
OFQR01002809
[OFQR] freshwater metagenome; Freshwater Lake
561
490
-
Trp
CCA
[ENA]
¡û
>WENV181370315
OFQS01003056
[OFQS] freshwater metagenome; Freshwater Lake
387
316
-
Trp
CCA
[ENA]
¡û
>WENV181370675
OFQT01002728
[OFQT] freshwater metagenome; Freshwater Lake
620
691
+
Trp
CCA
[ENA]
¡û
>WENV181836895
OGVJ01044734
[OGVJ] freshwater metagenome; freshwater
202
131
-
Trp
CCA
[ENA]
¡û
>WENV183092927
OLLO01000351
[OLLO] soil metagenome; soil
1569
1643
+
Trp
CCA
[ENA]
¡û
>WENV183740654
PJUF01005450
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
970
899
-
Trp
CCA
[ENA]
¡û
>WENV170551477
CXWJ01008964
[CXWJ] wastewater metagenome; activated sludge
1776
1849
+
Trp
CCA
[ENA]
¡û
>WENV170606270
FUWD010639141
[FUWD] metagenome; unknown
235
162
-
Trp
CCA
[ENA]
¡û
>WENV170981195
MWVT01041114
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
775
702
-
Trp
CCA
[ENA]
¡û
>WENV170981746
MWVT01194459
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
316
245
-
Trp
CCA
[ENA]
¡û
>WENV170982683
MWVU01193680
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
203
132
-
Trp
CCA
[ENA]
¡û
>WENV170983294
MWVV01019019
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
1189
1118
-
Trp
CCA
[ENA]
¡û
>WENV170983551
MWVV01050402
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
373
444
+
Trp
CCA
[ENA]
¡û
>WENV170983875
MWVV01108720
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
124
51
-
Trp
CCA
[ENA]
¡û
>WENV170983882
MWVV01111518
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
130
203
+
Trp
CCA
[ENA]
¡û
>WENV170984328
MWVV01238919
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
349
278
-
Trp
CCA
[ENA]
¡û
>WENV170984855
MWVW01000751
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
4836
4763
-
Trp
CCA
[ENA]
¡û
>WENV170984887
MWVW01001761
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
1342
1415
+
Trp
CCA
[ENA]
¡û
>WENV170984965
MWVW01005905
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
1331
1405
+
Trp
CCA
[ENA]
¡û
>WENV170985063
MWVW01016407
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
474
403
-
Trp
CCA
[ENA]
¡û
>WENV170985678
MWVX01000440
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
11426
11353
-
Trp
CCA
[ENA]
¡û
>WENV170985980
MWVX01010040
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1500
1571
+
Trp
CCA
[ENA]
¡û
>WENV170986131
MWVX01017423
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
21
95
+
Trp
CCA
[ENA]
¡û
>WENV170986352
MWVX01032708
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
421
492
+
Trp
CCA
[ENA]
¡û
>WENV170987369
MWVX01179363
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
434
508
+
Trp
CCA
[ENA]
¡û
>WENV170987634
MWVX01233345
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
107
33
-
Trp
CCA
[ENA]
¡û
>WENV170987899
MWVX01309183
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
383
454
+
Trp
CCA
[ENA]
¡û
>WENV170988197
MWVX01405395
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
8
81
+
Trp
CCA
[ENA]
¡û
>WENV170988430
MWVX01491215
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
237
166
-
Trp
CCA
[ENA]
¡û
>WENV170988655
MWVX01569519
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
21
95
+
Trp
CCA
[ENA]
¡û
>WENV170989233
MWVZ01005296
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
254
183
-
Trp
CCA
[ENA]
¡û
>WENV170990029
MWVZ01185739
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
116
187
+
Trp
CCA
[ENA]
¡û
>WENV170990250
MWWA01000075
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
4595
4522
-
Trp
CCA
[ENA]
¡û
>WENV170992092
MWWB01001016
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
5074
5145
+
Trp
CCA
[ENA]
¡û
>WENV170992430
MWWB01028177
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
253
182
-
Trp
CCA
[ENA]
¡û
>WENV170992778
MWWB01088935
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
503
430
-
Trp
CCA
[ENA]
¡û
>WENV170993264
MWWB01241681
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
408
337
-
Trp
CCA
[ENA]
¡û
>WENV170993321
MWWB01262794
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
147
76
-
Trp
CCA
[ENA]
¡û
>WENV170993571
MWWB01357698
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
197
268
+
Trp
CCA
[ENA]
¡û
>WENV170993862
MWWC01020033
[MWWC] soil metagenome; MS3-5 sample; Antarctic (ecotone) soil
354
283
-
Trp
CCA
[ENA]
¡û
>WENV170994594
MWWE01011869
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
336
407
+
Trp
CCA
[ENA]
¡û
>WENV170994713
MWWE01033709
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
6
79
+
Trp
CCA
[ENA]
¡û
>WENV170995297
MWWF01000199
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
5517
5444
-
Trp
CCA
[ENA]
¡û
>WENV170995572
MWWF01024173
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
734
661
-
Trp
CCA
[ENA]
¡û
>WENV170995693
MWWF01039690
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
579
652
+
Trp
CCA
[ENA]
¡û
>WENV170995740
MWWF01047429
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
240
167
-
Trp
CCA
[ENA]
¡û
>WENV170996215
MWWF01179153
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
386
457
+
Trp
CCA
[ENA]
¡û
>WENV170996374
MWWF01241359
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
425
354
-
Trp
CCA
[ENA]
¡û
>WENV170996475
MWWF01288141
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
83
156
+
Trp
CCA
[ENA]
¡û
>WENV170996479
MWWF01289329
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
348
277
-
Trp
CCA
[ENA]
¡û
>WENV170997274
MWWG01072195
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
451
380
-
Trp
CCA
[ENA]
¡û
>WENV170997358
MWWG01099290
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
187
260
+
Trp
CCA
[ENA]
¡û
>WENV170997492
MWWG01154563
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
39
110
+
Trp
CCA
[ENA]
¡û
>WENV170997533
MWWG01177821
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
191
120
-
Trp
CCA
[ENA]
¡û
>WENV170997645
MWWG01220238
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
244
173
-
Trp
CCA
[ENA]
¡û
>WENV170999183
MWWK01002542
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
747
820
+
Trp
CCA
[ENA]
¡û
>WENV170999403
MWWK01047672
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
112
183
+
Trp
CCA
[ENA]
¡û
>WENV170999428
MWWK01055875
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
453
525
+
Trp
CCA
[ENA]
¡û
>W09123571
ACHA01000059
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
30139
30066
-
Trp
CCA
[ENA]
¡û
>W09123604
ACHB01000007
Bacteroidota
Sphingobacterium spiritivorum ATCC 33300 [ACHB]
94070
94143
+
Trp
CCA
[ENA]
¡û
>W1910805083
MTKN01000003
Bacteroidota
[Flexibacter] sp. ATCC 35208 [MTKN]
45798
45727
-
Trp
CCA
[ENA]
¡û
>W1810364500
PVTH01000001
Bacteroidota
Arcticibacter pallidicorallinus CGMCC 1.9313 [PVTH]
49023
49094
+
Trp
CCA
[ENA]
¡û
>W1810400831
PYGK01000006
Bacteroidota
Chitinophaga ginsengisoli DSM 18107 [PYGK]
28775
28846
+
Trp
CCA
[ENA]
¡û
>W1810474641
QAIL01000169
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
2029
2100
+
Trp
CCA
[ENA]
¡û
>W1810564217
QEAS01000017
Bacteroidota
Pararcticibacter amylolyticus FJ4-8 [QEAS]
70510
70439
-
Trp
CCA
[ENA]
¡û
>W1810608355
QGTG01000004
Bacteroidota
Chitinophaga sp. S165 [QGTG]
163470
163541
+
Trp
CCA
[ENA]
¡û
>W1810676158
QKLU01000006
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
173833
173904
+
Trp
CCA
[ENA]
¡û
>W1810789233
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
1754078
1754149
+
Trp
CCA
[ENA]
¡û
>W1810858511
QTJV01000001
Bacteroidota
Chitinophaga silvisoli K20C18050901 [QTJV]
272854
272925
+
Trp
CCA
[ENA]
¡û
>C151016387
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
2434207
2434134
-
Trp
CCA
[Ensembl]
¡û
>W2010369869
CAHJWG010000013
Bacteroidota
Sphingobacteriaceae bacterium [CAHJWG]
48349
48420
+
Trp
CCA
[ENA]
¡û
>W2010459095
JAAFZB010000092
Bacteroidota
Flavihumibacter sp. R14 [JAAFZB]
101044
101115
+
Trp
CCA
[ENA]
¡û
>W2010714004
JACHVO010000001
Bacteroidota
Chitinophaga sancti 1232 [JACHVO]
278307
278378
+
Trp
CCA
[ENA]
¡û
>W2010912795
MTKN01000003
Bacteroidota
[Flexibacter] sp. ATCC 35208 [MTKN]
45798
45727
-
Trp
CCA
[ENA]
¡û
>W2011432219
RJJR01000002
Bacteroidota
Ferruginibacter sp. BO-59 [RJJR]
481538
481609
+
Trp
CCA
[ENA]
¡û
>W2011498414
RXOC01000003
Bacteroidota
Pedobacter tournemirensis R1 [RXOC]
468304
468233
-
Trp
CCA
[ENA]
¡û
>W2011531819
SBJH01000071
Bacteroidota
Olivibacter sp. XZL3 [SBJH]
41607
41536
-
Trp
CCA
[ENA]
¡û
>W2011634689
SMGO01000003
Bacteroidota
Pedobacter bauzanensis DSM 22554 [SMGO]
221862
221791
-
Trp
CCA
[ENA]
¡û
>W2011652853
SOAB01000003
Bacteroidota
Pedobacter sp. OK701 [SOAB]
310773
310702
-
Trp
CCA
[ENA]
¡û
>W2011839999
UGYW01000002
Bacteroidota
Sphingobacterium spiritivorum NCTC11388 [UGYW]
2325399
2325470
+
Trp
CCA
[ENA]
¡û
>W2011840144
UGYY01000002
Bacteroidota
Sphingobacterium spiritivorum NCTC11386 [UGYY]
4231789
4231718
-
Trp
CCA
[ENA]
¡û
>W2011951825
UWUA01000006
Bacteroidota
Olivibacter jilunii P8502 [UWUA]
105400
105471
+
Trp
CCA
[ENA]
¡û
>W2012021696
VFPL01000001
Bacteroidota
Pedobacter tournemirensis DSM 23085 [VFPL]
4808581
4808510
-
Trp
CCA
[ENA]
¡û
>W2012047810
VIWA01000002
Bacteroidota
Chitinophaga pinensis 1204 [VIWA]
277410
277481
+
Trp
CCA
[ENA]
¡û
>W2012103353
VOHQ01000002
Bacteroidota
Terrimonas sp. YJ03 [VOHQ]
672240
672311
+
Trp
CCA
[ENA]
¡û
>W2012143525
VTRT01000012
Bacteroidota
Pedobacter sp. BS3 [VTRT]
27248
27177
-
Trp
CCA
[ENA]
¡û
>W2012196190
VWNE01000018
Bacteroidota
Pedobacter tournemirensis TF5-37.2-LB10 [VWNE]
42366
42295
-
Trp
CCA
[ENA]
¡û
>W2012412054
WPIK01000004
Bacteroidota
Mucilaginibacter sp. HMF7410 [WPIK]
222899
222828
-
Trp
CCA
[ENA]
¡û
>W2110409451
JAEHFW010000001
Bacteroidota
Mucilaginibacter segetis SD-g [JAEHFW]
478927
478998
+
Trp
CCA
[ENA]
¡û
>W2110425571
JAELTV010000030
Bacteroidota
Pedobacter sp. ASV19 [JAELTV]
19050
19121
+
Trp
CCA
[ENA]
¡û
>W2110492963
JAFEWC010000001
Bacteroidota
Segetibacter sp. SYSU D00508 [JAFEWC]
1449201
1449272
+
Trp
CCA
[ENA]
¡û
>W2110493016
JAFEWD010000005
Bacteroidota
Pedobacter sp. SYSU D00535 [JAFEWD]
44308
44379
+
Trp
CCA
[ENA]
¡û
>W2110692676
JAIQDI010000001
Bacteroidota
Niabella sp. 3A5MI-3 [JAIQDI]
1178064
1177993
-
Trp
CCA
[ENA]
¡û
>C201099360
CP041643
Bacteroidota
Olivibacter sp. LS-1 [CP041643]
2266963
2267034
+
Trp
CCA
-
¡û
>C211134534
CP060497
Bacteroidota
Olivibacter sp. SDN3 [CP060497]
3094260
3094331
+
Trp
CCA
-
¡û
>C211241201
CP068082
Bacteroidota
Sphingobacterium spiritivorum FDAARGOS_1146 [CP068082]
3104589
3104660
+
Trp
CCA
-
¡û
>C211241280
CP068083
Bacteroidota
Sphingobacterium spiritivorum FDAARGOS_1145 [CP068083]
859261
859190
-
Trp
CCA
-
¡û
>C211241335
CP068084
Bacteroidota
Sphingobacterium spiritivorum FDAARGOS_1144 [CP068084]
1058932
1058861
-
Trp
CCA
-
¡û
>C231364533
CP095855
Bacteroidota
Chitinophaga filiformis YT5 [CP095855]
2046552
2046623
+
Trp
CCA
-
¡û
>C231507233
CP107006
Bacteroidota
Chitinophaga sp. R8 [CP107006]
310973
311044
+
Trp
CCA
-
¡û
>C231566662
CP115483
Bacteroidota
Sphingobacterium sp. SYP-B4668 [CP115483]
4503368
4503297
-
Trp
CCA
-
¡û
>C241066120
CP042436
Bacteroidota
Mucilaginibacter ginsenosidivorans Gsoil 3017 [CP042436]
4812473
4812402
-
Trp
CCA
-
¡û
>C241281559
CP128362
Bacteroidota
Chitinophaga sp. LS1 [CP128362]
3053792
3053863
+
Trp
CCA
-
¡û
>C241352866
CP139972
Bacteroidota
Chitinophaga sancti HAMBI_1988 [CP139972]
6604960
6605031
+
Trp
CCA
-
¡û
>C241354831
CP140154
Bacteroidota
Chitinophaga sancti ATCC 23090 [CP140154]
4230373
4230302
-
Trp
CCA
-
¡û
>W1511352483
JROE01000005
Bacteroidota
Sphingobacteriaceae bacterium DW12 [JROE]
86186
86259
+
Trp
CCA
[ENA]
¡û
>C11121206
CP002584
Bacteroidota
Sphingobacterium sp. 21 [CP002584]
2967108
2967181
+
Trp
CCA
[Ensembl]
¡û
>C161090553
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
3820330
3820257
-
Trp
CCA
[Ensembl]
¡û
>W121017774
AGSA01000028
Bacteroidota
Niabella soli DSM 19437 [AGSA]
205334
205261
-
Trp
CCA
[ENA]
¡û
>WENV077364
AAFX01027388
Soil microbial communities from Minnesota Farm
168
243
+
Trp
CCA
[ENA]
>W1710512687
FMZO01000020
Bacteroidota
Niabella drilacis [FMZO]
60157
60230
+
Trp
CCA
[ENA]
¡û
>W1710515147
FNBN01000006
Bacteroidota
Chitinophaga filiformis [FNBN]
155767
155694
-
Trp
CCA
[ENA]
¡û
>W1710543712
FOAF01000013
Bacteroidota
Olivibacter domesticus domesticum [FOAF]
45235
45164
-
Trp
CCA
[ENA]
¡û
>W1710579997
FPIZ01000007
Bacteroidota
Chitinophaga sancti [FPIZ]
270547
270618
+
Trp
CCA
[ENA]
¡û
>W1710592512
FRCN01000004
Bacteroidota
Chitinophaga sp. CF418 [FRCN]
184316
184243
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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