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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.871194 (120 seq.)
>W1710870331
LMKK01000003
Actinomycetota
Agreia sp. Leaf210 [LMKK]
568857
568930
+
Cys
GCA
[ENA]
¡û
>W1710872357
LMLX01000005
Actinomycetota
Agreia sp. Leaf244 [LMLX]
381457
381530
+
Cys
GCA
[ENA]
¡û
>W1710873981
LMNF01000002
Actinomycetota
Agreia sp. Leaf283 [LMNF]
286606
286533
-
Cys
GCA
[ENA]
¡û
>W1710875762
LMOQ01000002
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
230187
230114
-
Cys
GCA
[ENA]
¡û
>W131165748
ARBV01000008
Actinomycetota
Nonomuraea coxensis DSM 45129 [ARBV]
144092
144163
+
Cys
GCA
[ENA]
¡û
>C171066468
CP017717
Actinomycetota
Nonomuraea sp. ATCC 55076 [CP017717]
944611
944540
-
Cys
GCA
-
¡û
>C171066471
CP017717
Actinomycetota
Nonomuraea sp. ATCC 55076 [CP017717]
868017
867944
-
Cys
GCA
-
¡û
>WENV180016975
FSWJ01000120
[FSWJ] metagenome; soil
31342
31271
-
Cys
GCA
[ENA]
¡û
>WENV180017296
FSWR01000068
[FSWR] metagenome; soil
116394
116465
+
Cys
GCA
[ENA]
¡û
>WENV180023972
FTIF01005321
[FTIF] metagenome; soil
8535
8464
-
Cys
GCA
[ENA]
¡û
>W141223255
BADC01000055
Actinomycetota
Corynebacterium-like bacterium B27 [BADC]
11078
11005
-
Cys
GCA
[ENA]
¡û
>WENV170700621
LIDZ01015782
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
1398
1469
+
Cys
GCA
[ENA]
¡û
>W141760783
JOAG01000050
Actinomycetota
Nonomuraea candida [JOAG]
65564
65493
-
Cys
GCA
[ENA]
¡û
>W141760786
JOAG01000050
Actinomycetota
Nonomuraea candida [JOAG]
4457
4384
-
Cys
GCA
[ENA]
¡û
>W1910857521
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
2060211
2060138
-
Cys
GCA
[ENA]
¡û
>W1910857555
NBXA01000021
Actinomycetota
Subtercola boreus P27444 [NBXA]
180891
180820
-
Cys
GCA
[ENA]
¡û
>W1910857600
NBXB01000027
Actinomycetota
Subtercola boreus P27479 [NBXB]
197478
197407
-
Cys
GCA
[ENA]
¡û
>W1910857639
NBXC01000014
Actinomycetota
Subtercola boreus P27924 [NBXC]
441234
441163
-
Cys
GCA
[ENA]
¡û
>W1910857682
NBXD01000014
Actinomycetota
Subtercola boreus P27979 [NBXD]
441244
441173
-
Cys
GCA
[ENA]
¡û
>W1910857725
NBXE01000019
Actinomycetota
Subtercola boreus P28004 [NBXE]
441246
441175
-
Cys
GCA
[ENA]
¡û
>W1911541303
OOHJ01000015
Actinomycetota
Actinomadura parvosata subsp. kistnae [OOHJ]
221509
221580
+
Cys
GCA
[ENA]
¡û
>W1911541306
OOHJ01000015
Actinomycetota
Actinomadura parvosata subsp. kistnae [OOHJ]
298097
298170
+
Cys
GCA
[ENA]
¡û
>W1911676921
QHHZ01000005
Actinomycetota
Nonomuraea sp. WAC 01424 [QHHZ]
409063
408992
-
Cys
GCA
[ENA]
¡û
>W1911798579
QYRT01000011
Actinomycetota
Subtercola vilae DB165 [QYRT]
17667
17738
+
Cys
GCA
[ENA]
¡û
>SRA1003067
SRR002326.180443
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
120
47
-
Cys
GCA
[SRA]
>W1810224234
POUD01000039
Actinomycetota
Nonomuraea aridisoli KC333 [POUD]
6678
6749
+
Cys
GCA
[ENA]
¡û
>W1810224263
POUD01000202
Actinomycetota
Nonomuraea aridisoli KC333 [POUD]
3017
3090
+
Cys
GCA
[ENA]
¡û
>W1810277317
PSTT01000040
Actinomycetota
Subtercola sp. Z020 [PSTT]
9873
9944
+
Cys
GCA
[ENA]
¡û
>W1810281978
PSXW01000003
Actinomycetota
Clavibacter michiganensis AY2B8 [PSXW]
57015
56942
-
Cys
GCA
[ENA]
¡û
>W1810356894
PVNG01000024
Actinomycetota
Nonomuraea fuscirosea CGMCC 4.7104 [PVNG]
13634
13705
+
Cys
GCA
[ENA]
¡û
>W1810364691
PVTL01000001
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
491823
491894
+
Cys
GCA
[ENA]
¡û
>W1810503455
QBKD01000001
Actinomycetota
Microbacteriaceae bacterium MWH-Ta3 [QBKD]
1430836
1430907
+
Cys
GCA
[ENA]
¡û
>W2010434182
JAAAHR010000036
Actinomycetota
Nonomuraea sp. K271 [JAAAHR]
35889
35816
-
Cys
GCA
[ENA]
¡û
>W2010498949
JAALGE010000003
Actinomycetota
Marisediminicola sp. SM7 A14 [JAALGE]
34103
34032
-
Cys
GCA
[ENA]
¡û
>W2010566255
JAATEP010000037
Actinomycetota
Nonomuraea sp. FMUSA5-5 [JAATEP]
2069
2140
+
Cys
GCA
[ENA]
¡û
>W2010566258
JAATEP010000037
Actinomycetota
Nonomuraea sp. FMUSA5-5 [JAATEP]
73778
73851
+
Cys
GCA
[ENA]
¡û
>W2010609808
JABMLJ010000001
Actinomycetota
Herbiconiux sp. VKM Ac-2851 [JABMLJ]
723090
723017
-
Cys
GCA
[ENA]
¡û
>W2010671078
JACCBM010000001
Actinomycetota
Herbiconiux flava DSM 26474 [JACCBM]
2802331
2802258
-
Cys
GCA
[ENA]
¡û
>W2010709287
JACHMB010000001
Actinomycetota
Nonomuraea jabiensis DSM 45507 [JACHMB]
11874973
11875044
+
Cys
GCA
[ENA]
¡û
>W2010709299
JACHMB010000001
Actinomycetota
Nonomuraea jabiensis DSM 45507 [JACHMB]
11798480
11798409
-
Cys
GCA
[ENA]
¡û
>W2010709694
JACHMI010000001
Actinomycetota
Nonomuraea rubra DSM 43768 [JACHMI]
3828143
3828072
-
Cys
GCA
[ENA]
¡û
>W2010709697
JACHMI010000001
Actinomycetota
Nonomuraea rubra DSM 43768 [JACHMI]
3759309
3759236
-
Cys
GCA
[ENA]
¡û
>W2010936260
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
2060211
2060138
-
Cys
GCA
[ENA]
¡û
>W2010936294
NBXA01000021
Actinomycetota
Subtercola boreus P27444 [NBXA]
180891
180820
-
Cys
GCA
[ENA]
¡û
>W2010936339
NBXB01000027
Actinomycetota
Subtercola boreus P27479 [NBXB]
197478
197407
-
Cys
GCA
[ENA]
¡û
>W2010936378
NBXC01000014
Actinomycetota
Subtercola boreus P27924 [NBXC]
441234
441163
-
Cys
GCA
[ENA]
¡û
>W2010936421
NBXD01000014
Actinomycetota
Subtercola boreus P27979 [NBXD]
441244
441173
-
Cys
GCA
[ENA]
¡û
>W2010936464
NBXE01000019
Actinomycetota
Subtercola boreus P28004 [NBXE]
441246
441175
-
Cys
GCA
[ENA]
¡û
>W2011170394
OOHJ01000015
Actinomycetota
Actinomadura parvosata subsp. kistnae [OOHJ]
221509
221580
+
Cys
GCA
[ENA]
¡û
>W2011170397
OOHJ01000015
Actinomycetota
Actinomadura parvosata subsp. kistnae [OOHJ]
298097
298170
+
Cys
GCA
[ENA]
¡û
>W2011253940
QHHZ01000005
Actinomycetota
Nonomuraea sp. WAC 01424 [QHHZ]
409063
408992
-
Cys
GCA
[ENA]
¡û
>W2011343547
QYRT01000011
Actinomycetota
Subtercola vilae DB165 [QYRT]
17667
17738
+
Cys
GCA
[ENA]
¡û
>W2011525064
SAUN01000001
Actinomycetota
Nonomuraea polychroma DSM 43925 [SAUN]
5467140
5467211
+
Cys
GCA
[ENA]
¡û
>W2011525117
SAUN01000001
Actinomycetota
Nonomuraea polychroma DSM 43925 [SAUN]
5530802
5530731
-
Cys
GCA
[ENA]
¡û
>W2011538896
SCNI01000002
Actinomycetota
Microbacteriaceae bacterium 3FA27C10 [SCNI]
150627
150554
-
Cys
GCA
[ENA]
¡û
>W2011538986
SCNK01000001
Actinomycetota
Microbacteriaceae bacterium 3P27C6 [SCNK]
221164
221091
-
Cys
GCA
[ENA]
¡û
>W2011635367
SMJZ01000088
Actinomycetota
Nonomuraea sp. KC201 [SMJZ]
32624
32551
-
Cys
GCA
[ENA]
¡û
>W2011636174
SMKO01000123
Actinomycetota
Nonomuraea sp. KC310 [SMKO]
15088
15161
+
Cys
GCA
[ENA]
¡û
>W2011636226
SMKP01000074
Actinomycetota
Nonomuraea sp. KC712 [SMKP]
42800
42727
-
Cys
GCA
[ENA]
¡û
>W2011636296
SMKQ01000049
Actinomycetota
Nonomuraea sp. CH32 [SMKQ]
4045
4118
+
Cys
GCA
[ENA]
¡û
>W2011636315
SMKQ01000261
Actinomycetota
Nonomuraea sp. CH32 [SMKQ]
6745
6817
+
Cys
GCA
[ENA]
¡û
>W2011637011
SMLD01000142
Actinomycetota
Nonomuraea sp. 6K102 [SMLD]
7666
7593
-
Cys
GCA
[ENA]
¡û
>W2011966988
VBUN01000029
Actinomycetota
Nonomuraea sp. KC401 [VBUN]
35934
35861
-
Cys
GCA
[ENA]
¡û
>W2011973907
VCJS01000053
Actinomycetota
Nonomuraea sp. 160415 [VCJS]
62394
62323
-
Cys
GCA
[ENA]
¡û
>W2011973919
VCJS01000111
Actinomycetota
Nonomuraea sp. 160415 [VCJS]
10718
10647
-
Cys
GCA
[ENA]
¡û
>W2011975944
VCKX01000386
Actinomycetota
Nonomuraea zeae DSM 100528 [VCKX]
3123
3196
+
Cys
GCA
[ENA]
¡û
>W2011975947
VCKX01000388
Actinomycetota
Nonomuraea zeae DSM 100528 [VCKX]
6648
6719
+
Cys
GCA
[ENA]
¡û
>W2011976007
VCKY01000268
Actinomycetota
Nonomuraea turkmeniaca DSM 43926 [VCKY]
12487
12558
+
Cys
GCA
[ENA]
¡û
>W2011976013
VCKY01000355
Actinomycetota
Nonomuraea turkmeniaca DSM 43926 [VCKY]
2939
3010
+
Cys
GCA
[ENA]
¡û
>W2011984978
VDLX02000008
Actinomycetota
Nonomuraea sp. PA1-10 [VDLX]
303229
303158
-
Cys
GCA
[ENA]
¡û
>W2012020539
VFOO01000001
Actinomycetota
Subtercola boreus DSM 13056 [VFOO]
1101292
1101365
+
Cys
GCA
[ENA]
¡û
>W2012065226
VJYI01000001
Actinomycetota
Nonomuraea sp. SYSU D8015 [VJYI]
1283391
1283462
+
Cys
GCA
[ENA]
¡û
>W2012065230
VJYI01000001
Actinomycetota
Nonomuraea sp. SYSU D8015 [VJYI]
1122015
1121942
-
Cys
GCA
[ENA]
¡û
>W2012125073
VRMG01000004
Actinomycetota
Glaciihabitans sp. CHu50b-6-2 [VRMG]
346137
346066
-
Cys
GCA
[ENA]
¡û
>W2012129664
VSEY01000014
Actinomycetota
Nonomuraea sp. PA05 [VSEY]
58541
58470
-
Cys
GCA
[ENA]
¡û
>W2012129700
VSEY01000082
Actinomycetota
Nonomuraea sp. PA05 [VSEY]
15600
15673
+
Cys
GCA
[ENA]
¡û
>W2110024099
BMGP01000003
Actinomycetota
Subtercola lobariae CGMCC 1.12976 [BMGP]
60345
60274
-
Cys
GCA
[ENA]
¡û
>W2110037751
BMRC01000002
Actinomycetota
Nonomuraea spiralis JCM 3286 [BMRC]
713518
713447
-
Cys
GCA
[ENA]
¡û
>W2110161114
JAAVUZ010000003
Actinomycetota
Glaciihabitans sp. dw_435 [JAAVUZ]
121361
121432
+
Cys
GCA
[ENA]
¡û
>W2110201576
JACDTW010000001
Actinomycetota
Subtercola lobariae 9583b [JACDTW]
1385969
1386040
+
Cys
GCA
[ENA]
¡û
>W2110301326
JADBEK010000001
Actinomycetota
Nonomuraea angiospora DSM 43173 [JADBEK]
3625425
3625354
-
Cys
GCA
[ENA]
¡û
>W2110328833
JADKRN010000002
Actinomycetota
Agreia pratensis VKM Ac-2874 [JADKRN]
369128
369055
-
Cys
GCA
[ENA]
¡û
>W2110329702
JADKSG010000002
Actinomycetota
Herbiconiux sp. VKM Ac-1786 [JADKSG]
673849
673776
-
Cys
GCA
[ENA]
¡û
>W2110363676
JADOVH010000003
Actinomycetota
Frigoribacterium sp. CG_9.8 [JADOVH]
102613
102684
+
Cys
GCA
[ENA]
¡û
>W2110458151
JAFBBU010000001
Actinomycetota
Subtercola frigoramans DSM 13057 [JAFBBU]
1865208
1865281
+
Cys
GCA
[ENA]
¡û
>C201261350
CP053344
Actinomycetota
Herbiconiux sp. SALV-R1 [CP053344]
1722597
1722524
-
Cys
GCA
-
¡û
>C211060595
CP043653
Actinomycetota
Glaciihabitans sp. INWT7 [CP043653]
1726281
1726210
-
Cys
GCA
-
¡û
>C211255107
CP068985
Actinomycetota
Nonomuraea coxensis DSM 45129 [CP068985]
5963865
5963936
+
Cys
GCA
-
¡û
>C211346922
CP076547
Actinomycetota
Subtercola sp. PAMC28395 [CP076547]
2544355
2544282
-
Cys
GCA
-
¡û
>C211410964
LR882035
Actinomycetota
Agreia sp. COWG [LR882035]
1589470
1589397
-
Cys
GCA
-
¡û
>C231187855
CP084058
Actinomycetota
Nonomuraea gerenzanensis L70 [CP084058]
8138171
8138242
+
Cys
GCA
-
¡û
>C231187858
CP084058
Actinomycetota
Nonomuraea gerenzanensis L70 [CP084058]
8205163
8205236
+
Cys
GCA
-
¡û
>C231248186
CP087997
Actinomycetota
Subtercola sp. AK-R2A1-2 [CP087997]
1207900
1207971
+
Cys
GCA
-
¡û
>C241017603
CP017146
Actinomycetota
Marisediminicola antarctica ZS314 [CP017146]
2170620
2170691
+
Cys
GCA
-
¡û
>C241098395
CP045572
Actinomycetota
Nonomuraea phyllanthi WYY166 [CP045572]
7343880
7343951
+
Cys
GCA
-
¡û
>W2130022644
JADOGI010000117
Actinomycetota
Nonomuraea cypriaca K274 [JADOGI]
10318
10389
+
Cys
GCA
[ENA]
¡û
>W2130022653
JADOGI010000151
Actinomycetota
Nonomuraea cypriaca K274 [JADOGI]
23593
23520
-
Cys
GCA
[ENA]
¡û
>C241201051
CP107853
Actinomycetota
Nonomuraea sp. NBC_00507 [CP107853]
6577407
6577336
-
Cys
GCA
-
¡û
>C241201054
CP107853
Actinomycetota
Nonomuraea sp. NBC_00507 [CP107853]
6509325
6509254
-
Cys
GCA
-
¡û
>W2130036475
JAHKRL010000356
Actinomycetota
Nonomuraea rhizosphaerae CGMCC 4.7431 [JAHKRL]
5334
5407
+
Cys
GCA
[ENA]
¡û
>W2310022392
BSEW01000002
Actinomycetota
Herbiconiux flava VKM Ac-2058 [BSEW]
961644
961717
+
Cys
GCA
[ENA]
¡û
>W1511524502
JYFC01000001
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
66751
66678
-
Cys
GCA
[ENA]
¡û
>W1610069747
BCST01000001
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
194032
194105
+
Cys
GCA
[ENA]
¡û
>W1610732677
LMKK01000003
Actinomycetota
Agreia sp. Leaf210 [LMKK]
568857
568930
+
Cys
GCA
[ENA]
¡û
>W1610734703
LMLX01000005
Actinomycetota
Agreia sp. Leaf244 [LMLX]
381457
381530
+
Cys
GCA
[ENA]
¡û
>W1610736327
LMNF01000002
Actinomycetota
Agreia sp. Leaf283 [LMNF]
286606
286533
-
Cys
GCA
[ENA]
¡û
>W1610738108
LMOQ01000002
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
230187
230114
-
Cys
GCA
[ENA]
¡û
>W1710067120
BCST01000001
Actinomycetota
Herbiconiux solani NBRC 106740 [BCST]
194032
194105
+
Cys
GCA
[ENA]
¡û
>W1710517528
FNDJ01000038
Actinomycetota
Nonomuraea jiangxiensis [FNDJ]
68794
68867
+
Cys
GCA
[ENA]
¡û
>W1710517538
FNDJ01000051
Actinomycetota
Nonomuraea jiangxiensis [FNDJ]
46091
46162
+
Cys
GCA
[ENA]
¡û
>W1710519848
FNFB01000004
Actinomycetota
Nonomuraea maritima [FNFB]
144436
144507
+
Cys
GCA
[ENA]
¡û
>W1710519851
FNFB01000004
Actinomycetota
Nonomuraea maritima [FNFB]
185447
185520
+
Cys
GCA
[ENA]
¡û
>W1710532028
FNPZ01000002
Actinomycetota
Herbiconiux ginsengi [FNPZ]
211071
211144
+
Cys
GCA
[ENA]
¡û
>W1710539883
FNVT01000007
Actinomycetota
Nonomuraea solani [FNVT]
182654
182727
+
Cys
GCA
[ENA]
¡û
>W1710539886
FNVT01000007
Actinomycetota
Nonomuraea solani [FNVT]
257121
257194
+
Cys
GCA
[ENA]
¡û
>W1710553800
FOHX01000005
Actinomycetota
Nonomuraea wenchangensis [FOHX]
563099
563028
-
Cys
GCA
[ENA]
¡û
>W1710553803
FOHX01000005
Actinomycetota
Nonomuraea wenchangensis [FOHX]
514253
514182
-
Cys
GCA
[ENA]
¡û
>W1710602494
FUYG01000002
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
165482
165409
-
Cys
GCA
[ENA]
¡û
>W1710608533
FXAY01000003
Actinomycetota
Agreia pratensis [FXAY]
375440
375513
+
Cys
GCA
[ENA]
¡û
>W1710609308
FXWI01000002
Actinomycetota
Agreia sp. VKM Ac-1783 [FXWI]
288413
288340
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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