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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.871363 (107 seq.)
>W1711079676
LSOF01000029
Gammaproteobacteria
Pseudomonas sp. BMS12 [LSOF]
8176
8249
+
Gly
TCC
[ENA]
¡û
>W1711144409
LVIC01000065
Gammaproteobacteria
Alcanivorax sp. KX64203 [LVIC]
5336
5409
+
Gly
TCC
[ENA]
¡û
>W1711174172
LWDZ01000008
Gammaproteobacteria
Pseudomonas argentinensis [LWDZ]
3365
3438
+
Gly
TCC
[ENA]
¡û
>W1711178778
LWHA01000009
Gammaproteobacteria
Pseudomonas seleniipraecipitans punonensis [LWHA]
3284
3357
+
Gly
TCC
[ENA]
¡û
>W1711708780
MSXU01000012
Gammaproteobacteria
Pseudomonas sp. PA1(2017) [MSXU]
19729
19802
+
Gly
TCC
[ENA]
¡û
>W1711708798
MSXV01000010
Gammaproteobacteria
Pseudomonas sp. PA15(2017) [MSXV]
3010
3083
+
Gly
TCC
[ENA]
¡û
>W1711708897
MSXW01000039
Gammaproteobacteria
Pseudomonas sp. PA27(2017) [MSXW]
3202
3275
+
Gly
TCC
[ENA]
¡û
>C171016552
CP012331
Gammaproteobacteria
Alloalcanivorax xenomutans P40 [CP012331]
3991215
3991142
-
Gly
TCC
-
¡û
>W141152607
AXBX01000067
Gammaproteobacteria
Alcanivorax sp. PN-3 [AXBX]
369
296
-
Gly
TCC
[ENA]
¡û
>W141217350
AZVM01000026
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I4 [AZVM]
2994
3067
+
Gly
TCC
[ENA]
¡û
>W141217416
AZVO01000006
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I3 [AZVO]
593
520
-
Gly
TCC
[ENA]
¡û
>W141230782
BATI01000043
Gammaproteobacteria
Pseudomonas alcaligenes NBRC 14159 [BATI]
35448
35375
-
Gly
TCC
[ENA]
¡û
>W141276058
JADM01000041
Gammaproteobacteria
Alcanivorax sp. 43B_GOM-46m [JADM]
1545
1472
-
Gly
TCC
[ENA]
¡û
>WENV170112517
CEGF01002036
[CEGF] microbial mat metagenome; grass silage
74
1
-
Gly
TCC
[ENA]
¡û
>WENV170837935
MDSZ01158330
[MDSZ] marine metagenome; seawater
3058
3131
+
Gly
TCC
[ENA]
¡û
>W141463652
JFJN01000151
Gammaproteobacteria
Pseudomonas composti AD6 [JFJN]
629
556
-
Gly
TCC
[ENA]
¡û
>W141728805
JNHE01000066
Gammaproteobacteria
Pseudomonas oleovorans [JNHE]
293
220
-
Gly
TCC
[ENA]
¡û
>W1911071677
NMQV01000046
Gammaproteobacteria
Pseudomonas sp. ASS-1 [NMQV]
2923
2996
+
Gly
TCC
[ENA]
¡û
>W1911246981
NSLB01000024
Gammaproteobacteria
Pseudomonas sp. HAR-UPW-AIA-41 [NSLB]
2822
2895
+
Gly
TCC
[ENA]
¡û
>W1911495080
OBMO01000018
Gammaproteobacteria
Alcanivorax xenomutans JC109 [OBMO]
109669
109596
-
Gly
TCC
[ENA]
¡û
>W1911681287
QJUH01000029
Gammaproteobacteria
Pseudomonas sp. P2A [QJUH]
3173
3246
+
Gly
TCC
[ENA]
¡û
>W1911681346
QJUI01000028
Gammaproteobacteria
Pseudomonas sp. P9A [QJUI]
40677
40604
-
Gly
TCC
[ENA]
¡û
>W1911681404
QJUJ01000017
Gammaproteobacteria
Pseudomonas sp. P18A [QJUJ]
3166
3239
+
Gly
TCC
[ENA]
¡û
>W1911681454
QJUK01000029
Gammaproteobacteria
Pseudomonas sp. P23A [QJUK]
3173
3246
+
Gly
TCC
[ENA]
¡û
>W1810154127
PIYS01000025
Gammaproteobacteria
Pseudomonas pharmacofabricae ZYSR67-Z [PIYS]
1422
1349
-
Gly
TCC
[ENA]
¡û
>W1810670677
QJRX01000008
Gammaproteobacteria
Pseudomonas alcaligenes MB-090714 [QJRX]
2958
3031
+
Gly
TCC
[ENA]
¡û
>W1810684874
QKYW01000019
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I2 [QKYW]
370
297
-
Gly
TCC
[ENA]
¡û
>W1810685145
QKZB01000014
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I1 [QKZB]
374
301
-
Gly
TCC
[ENA]
¡û
>W1810787878
QREA01000010
Gammaproteobacteria
Alcanivorax sp. EA2 [QREA]
4930
5003
+
Gly
TCC
[ENA]
¡û
>W2010071765
AQPF01000088
Gammaproteobacteria
Alcanivorax sp. 6-D-6 [AQPF]
378
305
-
Gly
TCC
[ENA]
¡û
>W2010310599
CABWME010000002
Gammaproteobacteria
Pseudomonas sp. 8AS [CABWME]
470097
470024
-
Gly
TCC
[ENA]
¡û
>W2010311374
CABWMR010000009
Gammaproteobacteria
Pseudomonas sp. 8Z [CABWMR]
362680
362607
-
Gly
TCC
[ENA]
¡û
>W2010540296
JAAQXB010000010
Gammaproteobacteria
Pseudomonas sp. WS 5019 [JAAQXB]
162894
162821
-
Gly
TCC
[ENA]
¡û
>W2010540352
JAAQXC010000007
Gammaproteobacteria
Pseudomonas sp. WS 5013 [JAAQXC]
3078
3151
+
Gly
TCC
[ENA]
¡û
>W2010607548
JABMCP010000432
Gammaproteobacteria
Pseudomonas sp. CrR25 [JABMCP]
2828
2901
+
Gly
TCC
[ENA]
¡û
>W2010607759
JABMCS010000234
Gammaproteobacteria
Pseudomonas sp. CrR14 [JABMCS]
2976
3049
+
Gly
TCC
[ENA]
¡û
>W2010669333
JACCAH010000001
Gammaproteobacteria
Pseudomonas composti ZKA28 [JACCAH]
376290
376363
+
Gly
TCC
[ENA]
¡û
>W2010672834
JACCCT010000001
Gammaproteobacteria
Pseudomonas sp. B11D7D [JACCCT]
1739286
1739359
+
Gly
TCC
[ENA]
¡û
>W2010673067
JACCCX010000001
Gammaproteobacteria
Pseudomonas oleovorans ZKA50 [JACCCX]
4623441
4623368
-
Gly
TCC
[ENA]
¡û
>W2010679761
JACDUE010000001
Gammaproteobacteria
Pseudomonas sp. B11D7A [JACDUE]
4847491
4847564
+
Gly
TCC
[ENA]
¡û
>W2010708433
JACHLL010000013
Gammaproteobacteria
Pseudomonas fluvialis S00202 [JACHLL]
546
473
-
Gly
TCC
[ENA]
¡û
>W2010738688
JACJFN010000003
Gammaproteobacteria
Pseudomonas sp. SR9 [JACJFN]
735319
735246
-
Gly
TCC
[ENA]
¡û
>W2011001847
NMQV01000046
Gammaproteobacteria
Pseudomonas sp. ASS-1 [NMQV]
2923
2996
+
Gly
TCC
[ENA]
¡û
>W2011070732
NSLB01000024
Gammaproteobacteria
Pseudomonas sp. HAR-UPW-AIA-41 [NSLB]
2822
2895
+
Gly
TCC
[ENA]
¡û
>W2011155984
OBMO01000018
Gammaproteobacteria
Alcanivorax xenomutans JC109 [OBMO]
109669
109596
-
Gly
TCC
[ENA]
¡û
>W2011261447
QJUH01000029
Gammaproteobacteria
Pseudomonas sp. P2A [QJUH]
3173
3246
+
Gly
TCC
[ENA]
¡û
>W2011261506
QJUI01000028
Gammaproteobacteria
Pseudomonas sp. P9A [QJUI]
40677
40604
-
Gly
TCC
[ENA]
¡û
>W2011261564
QJUJ01000017
Gammaproteobacteria
Pseudomonas sp. P18A [QJUJ]
3166
3239
+
Gly
TCC
[ENA]
¡û
>W2011261614
QJUK01000029
Gammaproteobacteria
Pseudomonas sp. P23A [QJUK]
3173
3246
+
Gly
TCC
[ENA]
¡û
>W2011530877
SBHZ01000002
Gammaproteobacteria
Pseudomonas sp. TBZ2 [SBHZ]
399325
399252
-
Gly
TCC
[ENA]
¡û
>W2011645459
SNUA01000014
Gammaproteobacteria
Alcanivorax sp. 24 [SNUA]
113366
113293
-
Gly
TCC
[ENA]
¡û
>W2011695700
SUKD01000040
Gammaproteobacteria
Pseudomonas sp. BMW13 [SUKD]
350
277
-
Gly
TCC
[ENA]
¡û
>W2011837593
UGUP01000002
Gammaproteobacteria
Pseudomonas alcaligenes NCTC10367 [UGUP]
4509187
4509114
-
Gly
TCC
[ENA]
¡û
>W2011858091
UNRD01000007
Gammaproteobacteria
Alcanivorax sp. Alg238-V104 [UNRD]
254057
253984
-
Gly
TCC
[ENA]
¡û
>W2012018329
VFNB01000001
Gammaproteobacteria
Pseudomonas sp. SLBN-2 [VFNB]
2817387
2817460
+
Gly
TCC
[ENA]
¡û
>W2012047255
VIVP01000008
Gammaproteobacteria
Pseudomonas sp. AG1028 [VIVP]
297528
297455
-
Gly
TCC
[ENA]
¡û
>W2012124402
VRKW01000043
Gammaproteobacteria
Ketobacter sp. MCCC 1A13808 [VRKW]
392
319
-
Gly
TCC
[ENA]
¡û
>W2012218863
VZPI01000008
Gammaproteobacteria
Pseudomonas argentinensis CCUG 50743 [VZPI]
405
332
-
Gly
TCC
[ENA]
¡û
>W2012311236
WELK01000002
Gammaproteobacteria
Pseudomonas sp. R-28-1W-6 [WELK]
718278
718205
-
Gly
TCC
[ENA]
¡û
>W2012311293
WELL01000003
Gammaproteobacteria
Pseudomonas sp. L-22-4S-12 [WELL]
2813
2886
+
Gly
TCC
[ENA]
¡û
>W2012338193
WIRE01000003
Gammaproteobacteria
Alcanivorax sp. PA15-N-34 [WIRE]
5216
5289
+
Gly
TCC
[ENA]
¡û
>W2110019911
BMDE01000020
Gammaproteobacteria
Pseudomonas fluvialis CCM 8778 [BMDE]
2855
2928
+
Gly
TCC
[ENA]
¡û
>W2110029708
BMKY01000027
Gammaproteobacteria
Alcanivorax dieselolei CGMCC 1.3690 [BMKY]
4901
4974
+
Gly
TCC
[ENA]
¡û
>W2110072109
BPMN01000018
Gammaproteobacteria
Pseudomonas alcaligenes KAM428 [BPMN]
2971
3044
+
Gly
TCC
[ENA]
¡û
>W2110072169
BPMO01000019
Gammaproteobacteria
Pseudomonas alcaligenes KAM429 [BPMO]
2971
3044
+
Gly
TCC
[ENA]
¡û
>W2110072224
BPMP01000019
Gammaproteobacteria
Pseudomonas alcaligenes KAM430 [BPMP]
2971
3044
+
Gly
TCC
[ENA]
¡û
>W2110072278
BPMQ01000018
Gammaproteobacteria
Pseudomonas alcaligenes KAM432 [BPMQ]
67936
67863
-
Gly
TCC
[ENA]
¡û
>W2110072333
BPMR01000019
Gammaproteobacteria
Pseudomonas alcaligenes KAM434 [BPMR]
2971
3044
+
Gly
TCC
[ENA]
¡û
>W2110072387
BPMS01000019
Gammaproteobacteria
Pseudomonas alcaligenes KAM435 [BPMS]
2971
3044
+
Gly
TCC
[ENA]
¡û
>W2110072443
BPMT01000019
Gammaproteobacteria
Pseudomonas alcaligenes KAM436 [BPMT]
2971
3044
+
Gly
TCC
[ENA]
¡û
>C201306488
LR130779
Gammaproteobacteria
Pseudomonas oleovorans T9AD [LR130779]
1678625
1678552
-
Gly
TCC
-
¡û
>C211018878
AP024354
Gammaproteobacteria
Pseudomonas alcaligenes KAM426 [AP024354]
727245
727318
+
Gly
TCC
-
¡û
>C211127218
CP060008
Gammaproteobacteria
Pseudomonas sp. B11D7D [CP060008]
1739286
1739359
+
Gly
TCC
-
¡û
>C211238664
CP067393
Gammaproteobacteria
Entomomonas sp. F2A [CP067393]
2885328
2885255
-
Gly
TCC
-
¡û
>C211248599
CP068551
Gammaproteobacteria
Pseudomonas khazarica ODT-83 [CP068551]
4596695
4596622
-
Gly
TCC
-
¡û
>C231010930
AP025273
Gammaproteobacteria
Pseudomonas alcaligenes MRCP2 [AP025273]
1739948
1740021
+
Gly
TCC
-
¡û
>C231077048
CP056087
Gammaproteobacteria
Pseudomonas argentinensis SA190 [CP056087]
4942353
4942280
-
Gly
TCC
-
¡û
>C231146208
CP076114
Gammaproteobacteria
Pseudomonas seleniipraecipitans D1-6 [CP076114]
3184102
3184175
+
Gly
TCC
-
¡û
>C231176416
CP082928
Gammaproteobacteria
Pseudomonas fulva ZJU1 [CP082928]
3005277
3005350
+
Gly
TCC
-
¡û
>W2110747999
LZEU01000001
Gammaproteobacteria
Pseudomonas alcaligenes AVO110 [LZEU]
4277089
4277016
-
Gly
TCC
[ENA]
¡û
>C231550638
CP113519
Gammaproteobacteria
Pseudomonas sp. GOM7 [CP113519]
720574
720647
+
Gly
TCC
-
¡û
>C231627607
CP120359
Gammaproteobacteria
Pseudomonas sp. AA-38 [CP120359]
677266
677339
+
Gly
TCC
-
¡û
>C241095128
CP045349
Gammaproteobacteria
Pseudomonas sp. THAF187a [CP045349]
4543341
4543268
-
Gly
TCC
-
¡û
>C241095459
CP045359
Gammaproteobacteria
Pseudomonas sp. THAF42 [CP045359]
4542799
4542726
-
Gly
TCC
-
¡û
>C241327870
CP136538
Gammaproteobacteria
Alloalcanivorax xenomutans GOM8 [CP136538]
3814063
3813990
-
Gly
TCC
-
¡û
>W2310007136
ARXS01000054
Gammaproteobacteria
Alloalcanivorax balearicus MACL04 [ARXS]
4951
5024
+
Gly
TCC
[ENA]
¡û
>W2310028394
BSSG01000006
Gammaproteobacteria
Pseudomonas straminea NBRC 16640 [BSSG]
3129
3202
+
Gly
TCC
[ENA]
¡û
>C11117184
CP002727
Gammaproteobacteria
Pseudomonas fulva 12-X [CP002727]
699802
699875
+
Gly
TCC
[Ensembl]
¡û
>W1511307135
JPMY01000019
Gammaproteobacteria
Pseudomonas sp. ML96 [JPMY]
334
261
-
Gly
TCC
[ENA]
¡û
>W1511403786
JTLK01000323
Gammaproteobacteria
Pseudomonas mendocina ZWU0006 [JTLK]
314
241
-
Gly
TCC
[ENA]
¡û
>C161077565
CP014784
Gammaproteobacteria
Pseudomonas alcaligenes NEB 585 [CP014784]
4300138
4300065
-
Gly
TCC
-
¡û
>W1610019420
ARXV01000029
Gammaproteobacteria
Alcanivorax nanhaiticus [ARXV]
5211
5284
+
Gly
TCC
[ENA]
¡û
>W1610109431
CZHF01000052
Gammaproteobacteria
Alloalcanivorax xenomutans dieselolei [CZHF]
448
375
-
Gly
TCC
[ENA]
¡û
>C131003671
CP003466
Gammaproteobacteria
Alloalcanivorax dieselolei B5 [CP003466]
4221377
4221304
-
Gly
TCC
[Ensembl]
¡û
>W1610918586
LSOF01000029
Gammaproteobacteria
Pseudomonas sp. BMS12 [LSOF]
8176
8249
+
Gly
TCC
[ENA]
¡û
>W1610955417
LVIC01000065
Gammaproteobacteria
Alcanivorax sp. KX64203 [LVIC]
5336
5409
+
Gly
TCC
[ENA]
¡û
>W1710016314
ARXV01000029
Gammaproteobacteria
Alcanivorax nanhaiticus [ARXV]
5211
5284
+
Gly
TCC
[ENA]
¡û
>W1710075785
BCZZ01000013
Gammaproteobacteria
Pseudomonas flavescens NBRC 103044 [BCZZ]
170185
170112
-
Gly
TCC
[ENA]
¡û
>W1710112135
CZHF01000052
Gammaproteobacteria
Alloalcanivorax xenomutans dieselolei [CZHF]
448
375
-
Gly
TCC
[ENA]
¡û
>W1710515106
FNBM01000010
Gammaproteobacteria
Pseudomonas seleniipraecipitans [FNBM]
3412
3485
+
Gly
TCC
[ENA]
¡û
>W1710517361
FNDG01000011
Gammaproteobacteria
Pseudomonas flavescens [FNDG]
3209
3282
+
Gly
TCC
[ENA]
¡û
>W1710559377
FOMO01000020
Gammaproteobacteria
Pseudomonas straminea [FOMO]
3097
3170
+
Gly
TCC
[ENA]
¡û
>W1710565283
FORC01000011
Gammaproteobacteria
Pseudomonas argentinensis [FORC]
373
300
-
Gly
TCC
[ENA]
¡û
>W1710572354
FOWP01000026
Gammaproteobacteria
Pseudomonas composti [FOWP]
360
287
-
Gly
TCC
[ENA]
¡û
>W1710591366
FRBQ01000019
Gammaproteobacteria
Pseudomonas punonensis [FRBQ]
373
300
-
Gly
TCC
[ENA]
¡û
>W1710596493
FTMP01000005
Gammaproteobacteria
Pseudomonas alcaligenes [FTMP]
2954
3027
+
Gly
TCC
[ENA]
¡û
>W1710598256
FTNW01000003
Gammaproteobacteria
Pseudomonas alcaligenes [FTNW]
3011
3084
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK