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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.871982 (47 seq.)
>W1711712873
MTCO01000297
Alphaproteobacteria
Brevirhabdus pacifica [MTCO]
4808
4735
-
Gly
TCC
[ENA]
¡û
>WENV180376740
OBOM01067829
[OBOM] marine metagenome; Seawater
127
200
+
Gly
TCC
[ENA]
¡û
>WENV170738208
LULO01028624
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
708
781
+
Gly
TCC
[ENA]
¡û
>W1911652503
QBBT01000028
Alphaproteobacteria
Rhodobacteraceae bacterium Lw-13e [QBBT]
42350
42423
+
Gly
TCC
[ENA]
¡û
>W1911653474
QDFI01000043
Alphaproteobacteria
Rhodobacteraceae bacterium LMIT002 [QDFI]
29460
29533
+
Gly
TCC
[ENA]
¡û
>W1911696512
QMEJ01000003
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
468225
468298
+
Gly
TCC
[ENA]
¡û
>W1911749918
QWJJ01000008
Alphaproteobacteria
Pseudooceanicola sp. CY03 [QWJJ]
182490
182563
+
Gly
TCC
[ENA]
¡û
>W1810090276
PGFI01000014
Alphaproteobacteria
Brevirhabdus pacifica DSM 27767 [PGFI]
259684
259757
+
Gly
TCC
[ENA]
¡û
>W1810584028
QEYE01000012
Alphaproteobacteria
Maritimibacter sp. 55A14 [QEYE]
132990
132917
-
Gly
TCC
[ENA]
¡û
>W1810603219
QGKU01000026
Alphaproteobacteria
Meridianimarinicoccus roseus TG-679 [QGKU]
122689
122762
+
Gly
TCC
[ENA]
¡û
>W1810914914
QVQC01000076
Alphaproteobacteria
Rhodobacteraceae bacterium W635 [QVQC]
62915
62842
-
Gly
TCC
[ENA]
¡û
>W2010529324
JAAOIE010000012
Alphaproteobacteria
Planktotalea sp. M26A2M [JAAOIE]
12835
12762
-
Gly
TCC
[ENA]
¡û
>W2010569742
JAATOW010000001
Alphaproteobacteria
Pseudooceanicola sp. HF7 [JAATOW]
117086
117013
-
Gly
TCC
[ENA]
¡û
>W2011235975
QBBT01000028
Alphaproteobacteria
Rhodobacteraceae bacterium Lw-13e [QBBT]
42350
42423
+
Gly
TCC
[ENA]
¡û
>W2011237033
QDFI01000043
Alphaproteobacteria
Rhodobacteraceae bacterium LMIT002 [QDFI]
29460
29533
+
Gly
TCC
[ENA]
¡û
>W2011276177
QMEJ01000003
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
468225
468298
+
Gly
TCC
[ENA]
¡û
>W2011319163
QWJJ01000008
Alphaproteobacteria
Pseudooceanicola sp. CY03 [QWJJ]
182490
182563
+
Gly
TCC
[ENA]
¡û
>W2011642298
SMZO01000089
Alphaproteobacteria
Rhodobacteraceae bacterium SM1902 [SMZO]
5827
5900
+
Gly
TCC
[ENA]
¡û
>W2011676212
SPUW01000003
Alphaproteobacteria
Pseudooceanicola sp. XY-99 [SPUW]
406301
406374
+
Gly
TCC
[ENA]
¡û
>W2011701812
SWBV01000007
Alphaproteobacteria
Puniceibacterium sp. HSS470 [SWBV]
182499
182572
+
Gly
TCC
[ENA]
¡û
>W2012400892
WNXQ01000003
Alphaproteobacteria
Pseudooceanicola sp. 216_PA32_1 [WNXQ]
300062
299989
-
Gly
TCC
[ENA]
¡û
>W2110653207
JAHVIT010000001
Alphaproteobacteria
Maritimibacter alkaliphilus SY-2-18 [JAHVIT]
198366
198293
-
Gly
TCC
[ENA]
¡û
>W2110654689
JAHVJX010000004
Alphaproteobacteria
Pseudooceanicola nitratireducens DP3N21-3 [JAHVJX]
143721
143794
+
Gly
TCC
[ENA]
¡û
>W2110654937
JAHVKC010000001
Alphaproteobacteria
Pseudooceanicola nitratireducens DP3N28-1 [JAHVKC]
1312679
1312752
+
Gly
TCC
[ENA]
¡û
>C201220471
CP049028
Alphaproteobacteria
Rhodobacteraceae bacterium SC52 [CP049028]
2279721
2279648
-
Gly
TCC
-
¡û
>W2110701205
JAIUZP010000010
Alphaproteobacteria
Pseudooceanicola nanhaiensis DP2Y115-3 [JAIUZP]
179526
179453
-
Gly
TCC
[ENA]
¡û
>C211133921
CP060436
Alphaproteobacteria
Pseudooceanicola algae Lw-13e [CP060436]
1679229
1679302
+
Gly
TCC
-
¡û
>C211201347
CP065161
Alphaproteobacteria
Rhodobacterales bacterium HKCCA1288 [CP065161]
2504593
2504666
+
Gly
TCC
-
¡û
>C241064172
CP042261
Alphaproteobacteria
Qingshengfaniella alkalisoli LN3S51 [CP042261]
238708
238635
-
Gly
TCC
-
¡û
>C241094729
CP045318
Alphaproteobacteria
Roseivivax sp. THAF197b [CP045318]
931377
931450
+
Gly
TCC
-
¡û
>C241095495
CP045360
Alphaproteobacteria
Roseivivax sp. THAF40 [CP045360]
989514
989587
+
Gly
TCC
-
¡û
>W2110802739
WVSG01000001
Alphaproteobacteria
Rhodobacterales bacterium FZCC0069 [WVSG]
2146118
2146045
-
Gly
TCC
[ENA]
¡û
>W2110802791
WVSH01000002
Alphaproteobacteria
Rhodobacterales bacterium HKCCA1058 [WVSH]
55711
55638
-
Gly
TCC
[ENA]
¡û
>W2110802806
WVSI01000001
Alphaproteobacteria
Rhodobacterales bacterium FZCC0188 [WVSI]
310179
310252
+
Gly
TCC
[ENA]
¡û
>W2110802879
WVSJ01000004
Alphaproteobacteria
Rhodobacterales bacterium HKCCA1065 [WVSJ]
48292
48219
-
Gly
TCC
[ENA]
¡û
>W2110802910
WVSK01000002
Alphaproteobacteria
Rhodobacterales bacterium HKCCD6035 [WVSK]
382896
382969
+
Gly
TCC
[ENA]
¡û
>W2110803146
WVSQ01000001
Alphaproteobacteria
Rhodobacterales bacterium LSUCC0374 [WVSQ]
414967
414894
-
Gly
TCC
[ENA]
¡û
>W2110803198
WVSR01000002
Alphaproteobacteria
Rhodobacterales bacterium LSUCC0387 [WVSR]
157162
157235
+
Gly
TCC
[ENA]
¡û
>W2110803240
WVSS01000001
Alphaproteobacteria
Rhodobacterales bacterium LSUCC1028 [WVSS]
2214736
2214809
+
Gly
TCC
[ENA]
¡û
>W1610018442
AQQX01000003
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
482331
482258
-
Gly
TCC
[ENA]
¡û
>W1710015532
AQQT01000002
Alphaproteobacteria
Loktanella sp. 22II-4b [AQQT]
546436
546363
-
Gly
TCC
[ENA]
¡û
>W1710015581
AQQU01000005
Alphaproteobacteria
Oceanicola sp. 22II-s10i [AQQU]
161826
161899
+
Gly
TCC
[ENA]
¡û
>W1710015658
AQQX01000003
Alphaproteobacteria
Pseudooceanicola atlanticus [AQQX]
482331
482258
-
Gly
TCC
[ENA]
¡û
>W1710539017
FNUZ01000004
Alphaproteobacteria
Thalassococcus halodurans [FNUZ]
236840
236913
+
Gly
TCC
[ENA]
¡û
>W1710542586
FNZG01000003
Alphaproteobacteria
Pseudooceanicola nitratireducens [FNZG]
327307
327234
-
Gly
TCC
[ENA]
¡û
>W1710558447
FOLX01000001
Alphaproteobacteria
Pseudooceanicola nitratireducens [FOLX]
1509685
1509758
+
Gly
TCC
[ENA]
¡û
>W1710599317
FTOQ01000002
Alphaproteobacteria
Roseivivax lentus [FTOQ]
458209
458282
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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