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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87217 (7 seq.)
>WENV180969638
ODUU01000471
[ODUU] human metagenome; G_DNA_Stool
33715
33627
-
Leu
TAA
[ENA]
¡û
>WENV181434963
OGDF01001901
[OGDF] human gut metagenome; human gut
11802
11714
-
Leu
TAA
[ENA]
¡û
>WENV181717589
OGPT01001608
[OGPT] human gut metagenome; faeces
2426
2338
-
Leu
TAA
[ENA]
¡û
>WENV181800409
OGRY01029167
[OGRY] human gut metagenome; faeces
1227
1139
-
Leu
TAA
[ENA]
¡û
>WENV181993516
OHAS01001345
[OHAS] human gut metagenome; faeces
414
326
-
Leu
TAA
[ENA]
¡û
>WENV183123144
OLNW01000309
[OLNW] human gut metagenome; faeces
43633
43545
-
Leu
TAA
[ENA]
¡û
>WENV183760109
PPYE01221971
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
507
595
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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