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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87218 (23 seq.)
>WENV180737174
ODHC01001417
[ODHC] human metagenome; G_DNA_Stool
8179
8265
+
Leu
TAA
[ENA]
¡û
>WENV181800415
OGRY01029265
[OGRY] human gut metagenome; faeces
193
279
+
Leu
TAA
[ENA]
¡û
>WENV182289396
OHVW01000030
[OHVW] human gut metagenome; feces
44830
44744
-
Leu
TAA
[ENA]
¡û
>WENV182294865
OHWE01001707
[OHWE] human gut metagenome; feces
3598
3512
-
Leu
TAA
[ENA]
¡û
>WENV182302845
OHWU01000033
[OHWU] human gut metagenome; feces
34526
34612
+
Leu
TAA
[ENA]
¡û
>WENV182309620
OHXK01005010
[OHXK] human gut metagenome; feces
1839
1925
+
Leu
TAA
[ENA]
¡û
>WENV182321056
OHYL01000278
[OHYL] human gut metagenome; feces
17110
17024
-
Leu
TAA
[ENA]
¡û
>WENV182341707
OIAG01002268
[OIAG] human gut metagenome; feces
4588
4674
+
Leu
TAA
[ENA]
¡û
>WENV182348791
OIBA01000108
[OIBA] human gut metagenome; feces
8848
8762
-
Leu
TAA
[ENA]
¡û
>WENV182357347
OIBT01000027
[OIBT] human gut metagenome; feces
34516
34602
+
Leu
TAA
[ENA]
¡û
>WENV182373301
OICZ01000305
[OICZ] human gut metagenome; feces
16043
16129
+
Leu
TAA
[ENA]
¡û
>WENV182379356
OIDM01000028
[OIDM] human gut metagenome; feces
34516
34602
+
Leu
TAA
[ENA]
¡û
>WENV182387844
OIEB01000028
[OIEB] human gut metagenome; feces
34528
34614
+
Leu
TAA
[ENA]
¡û
>WENV182612741
OJJY01010271
[OJJY] metagenome; faeces
833
747
-
Leu
TAA
[ENA]
¡û
>WENV182754944
OJRE01000528
[OJRE] human gut metagenome; stool sample
8071
7985
-
Leu
TAA
[ENA]
¡û
>WENV183265870
OLRT01000118
[OLRT] human gut metagenome; faeces
29717
29631
-
Leu
TAA
[ENA]
¡û
>WENV183381001
OLYJ01000018
[OLYJ] human gut metagenome; feces
12168
12254
+
Leu
TAA
[ENA]
¡û
>WENV183399522
OLZQ01008084
[OLZQ] human gut metagenome; feces
156
242
+
Leu
TAA
[ENA]
¡û
>WENV183403719
OLZW01000900
[OLZW] human gut metagenome; feces
5940
6026
+
Leu
TAA
[ENA]
¡û
>WENV183444056
OMCO01000018
[OMCO] human gut metagenome; feces
76271
76185
-
Leu
TAA
[ENA]
¡û
>WENV183444863
OMCP01000023
[OMCP] human gut metagenome; feces
64384
64298
-
Leu
TAA
[ENA]
¡û
>WENV183470433
OMEK01000015
[OMEK] human gut metagenome; feces
80805
80719
-
Leu
TAA
[ENA]
¡û
>WENV183486609
OMFR01002558
[OMFR] human gut metagenome; feces
4782
4696
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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