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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.872255 (45 seq.)
>W1710860271
LMCT01000009
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
38489
38562
+
Gly
CCC
[ENA]
¡û
>W1710866994
LMHX01000050
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
61877
61804
-
Gly
CCC
[ENA]
¡û
>W1711183449
LWLA01000049
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
111700
111773
+
Gly
CCC
[ENA]
¡û
>W131234274
AUKQ01000012
Actinomycetota
Streptomyces sp. CNH287 [AUKQ]
185174
185101
-
Gly
CCC
[ENA]
¡û
>WENV180023383
FTHV01004174
[FTHV] metagenome; soil
962
1033
+
Gly
CCC
[ENA]
¡û
>WENV180023523
FTHY01009232
[FTHY] metagenome; soil
962
1033
+
Gly
CCC
[ENA]
¡û
>WENV180024827
FTIJ01090071
[FTIJ] metagenome; soil
135
206
+
Gly
CCC
[ENA]
¡û
>WENV180033171
FTKF01006418
[FTKF] metagenome; soil
1656
1585
-
Gly
CCC
[ENA]
¡û
>WENV180033287
FTKF01296404
[FTKF] metagenome; soil
2508
2437
-
Gly
CCC
[ENA]
¡û
>WENV180033592
FTKL01000247
[FTKL] metagenome; soil
25194
25123
-
Gly
CCC
[ENA]
¡û
>WENV180033656
FTKL01001258
[FTKL] metagenome; soil
12126
12055
-
Gly
CCC
[ENA]
¡û
>WENV180035165
FTKT01003205
[FTKT] metagenome; soil
34112
34183
+
Gly
CCC
[ENA]
¡û
>W141282693
JAIY01000004
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
499766
499693
-
Gly
CCC
[ENA]
¡û
>W141282745
JAIZ01000011
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
12594
12523
-
Gly
CCC
[ENA]
¡û
>WENV170565572
FJVZ01000344
[FJVZ] metagenome; soil
21194
21265
+
Gly
CCC
[ENA]
¡û
>W141761916
JOBB01000243
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
1219
1292
+
Gly
CCC
[ENA]
¡û
>W141764984
JODB01000541
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
1211
1284
+
Gly
CCC
[ENA]
¡û
>W141765989
JODS01000003
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
348295
348368
+
Gly
CCC
[ENA]
¡û
>W141770030
JOGF01000413
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
1237
1310
+
Gly
CCC
[ENA]
¡û
>W141771118
JOGY01000315
Actinomycetota
Streptomyces sp. NRRL S-1777 [JOGY]
135
64
-
Gly
CCC
[ENA]
¡û
>W141818486
JQLN01000005
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
1543901
1543972
+
Gly
CCC
[ENA]
¡û
>W141819965
JQMO01000003
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
2886039
2886110
+
Gly
CCC
[ENA]
¡û
>W1810121510
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
4114062
4114134
+
Gly
CCC
[ENA]
¡û
>W1810172994
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
3609884
3609955
+
Gly
CCC
[ENA]
¡û
>W1810394728
PYBW01000134
Actinomycetota
Streptomyces tateyamensis ATCC 21389 [PYBW]
45307
45380
+
Gly
CCC
[ENA]
¡û
>W2010705670
JACHJR010000001
Actinomycetota
Kitasatospora gansuensis DSM 44786 [JACHJR]
3676246
3676173
-
Gly
CCC
[ENA]
¡û
>W2010705855
JACHJV010000001
Actinomycetota
Kitasatospora kifunensis DSM 41654 [JACHJV]
4140101
4140172
+
Gly
CCC
[ENA]
¡û
>W2012047366
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
3794873
3794800
-
Gly
CCC
[ENA]
¡û
>W2110039401
BMSD01000002
Actinomycetota
Kitasatospora herbaricolor JCM 4138 [BMSD]
488005
487934
-
Gly
CCC
[ENA]
¡û
>W2110053256
BNBO01000011
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
61540
61469
-
Gly
CCC
[ENA]
¡û
>W2110751214
MSJQ01000030
Actinomycetota
Streptomyces sp. CBMA156 [MSJQ]
30890
30817
-
Gly
CCC
[ENA]
¡û
>C241202558
CP107904
Actinomycetota
Kitasatospora sp. NBC_00458 [CP107904]
4452267
4452194
-
Gly
CCC
-
¡û
>C241208727
CP108404
Actinomycetota
Kitasatospora sp. NBC_01302 [CP108404]
4663982
4663911
-
Gly
CCC
-
¡û
>C241209648
CP108458
Actinomycetota
Kitasatospora sp. NBC_01266 [CP108458]
4542847
4542920
+
Gly
CCC
-
¡û
>C241209714
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
4494496
4494568
+
Gly
CCC
-
¡û
>C241210150
CP108476
Actinomycetota
Kitasatospora sp. NBC_01250 [CP108476]
4639517
4639445
-
Gly
CCC
-
¡û
>C241210216
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
5177772
5177700
-
Gly
CCC
-
¡û
>C241210284
CP108484
Actinomycetota
Kitasatospora sp. NBC_01246 [CP108484]
4305219
4305146
-
Gly
CCC
-
¡û
>C241211679
CP108561
Actinomycetota
Kitasatospora purpeofusca NBC_01203 [CP108561]
5133826
5133899
+
Gly
CCC
-
¡û
>C241211749
CP108562
Actinomycetota
Kitasatospora purpeofusca NBC_01202 [CP108562]
5064893
5064966
+
Gly
CCC
-
¡û
>W1511529095
JYJF01000128
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
12986
12913
-
Gly
CCC
[ENA]
¡û
>W1511555629
JZWY01000097
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
5436
5363
-
Gly
CCC
[ENA]
¡û
>W1511696759
LGDO01000001
Actinomycetota
Streptomyces sp. XY431 [LGDO]
168972
169045
+
Gly
CCC
[ENA]
¡û
>W1610722617
LMCT01000009
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
38489
38562
+
Gly
CCC
[ENA]
¡û
>W1610729340
LMHX01000050
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
61877
61804
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK