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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87226 (14 seq.)
>WENV181329793
OFLY01000180
[OFLY] human gut metagenome; human gut
52380
52468
+
Ser
TGA
[ENA]
¡û
>WENV181348324
OFMN01000366
[OFMN] human gut metagenome; human gut
41966
42054
+
Ser
TGA
[ENA]
¡û
>WENV181679326
OGOS01000228
[OGOS] human gut metagenome; faeces
820
732
-
Ser
TGA
[ENA]
¡û
>WENV181714892
OGPR01008966
[OGPR] human gut metagenome; faeces
1912
2000
+
Ser
TGA
[ENA]
¡û
>WENV181747814
OGQO01000091
[OGQO] human gut metagenome; faeces
87054
87142
+
Ser
TGA
[ENA]
¡û
>WENV181950302
OGZG01001302
[OGZG] human gut metagenome; faeces
1118
1030
-
Ser
TGA
[ENA]
¡û
>WENV182316268
OHYD01000176
[OHYD] human gut metagenome; feces
606
518
-
Ser
TGA
[ENA]
¡û
>WENV182321449
OHYM01000020
[OHYM] human gut metagenome; feces
1309
1221
-
Ser
TGA
[ENA]
¡û
>WENV182345063
OIAN01000048
[OIAN] human gut metagenome; feces
56334
56422
+
Ser
TGA
[ENA]
¡û
>WENV182386651
OIDZ01000017
[OIDZ] human gut metagenome; feces
634
546
-
Ser
TGA
[ENA]
¡û
>WENV182705613
OJOV01002515
[OJOV] human gut metagenome; stool sample
771
683
-
Ser
TGA
[ENA]
¡û
>WENV183024727
OLFT01000922
[OLFT] human gut metagenome; faeces
32080
32168
+
Ser
TGA
[ENA]
¡û
>WENV183106821
OLNM01000053
[OLNM] human gut metagenome; faeces
100291
100379
+
Ser
TGA
[ENA]
¡û
>WENV183157550
OLOT01001678
[OLOT] human gut metagenome; faeces
10242
10330
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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