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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87226 (126 seq.)
>W1711018572
LQXA01000036
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
56487
56400
-
Ser
GGA
[ENA]
¡û
>W1711079610
LSOE01000008
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
46922
46835
-
Ser
GGA
[ENA]
¡û
>W1711357193
MDHB01000003
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
84375
84462
+
Ser
GGA
[ENA]
¡û
>W1711357243
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
996579
996492
-
Ser
GGA
[ENA]
¡û
>W1711357278
MDHD01000343
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
1869
1782
-
Ser
GGA
[ENA]
¡û
>W1711357313
MDHE01000286
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
16511
16598
+
Ser
GGA
[ENA]
¡û
>W1711357361
MDHF01000199
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
16349
16436
+
Ser
GGA
[ENA]
¡û
>W1711357406
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
2574195
2574108
-
Ser
GGA
[ENA]
¡û
>W1711357467
MDHH01000008
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
196027
195940
-
Ser
GGA
[ENA]
¡û
>W1711357500
MDHI01000004
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
571760
571673
-
Ser
GGA
[ENA]
¡û
>W1711357557
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
885577
885490
-
Ser
GGA
[ENA]
¡û
>W1711357561
MDHK01000006
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
17059
17146
+
Ser
GGA
[ENA]
¡û
>W1711357648
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
1025813
1025726
-
Ser
GGA
[ENA]
¡û
>W1711357692
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
1006748
1006661
-
Ser
GGA
[ENA]
¡û
>W1711360693
MDJW01000007
Actinomycetota
Clavibacter michiganensis [MDJW]
690764
690851
+
Ser
GGA
[ENA]
¡û
>W1711360766
MDJX01000276
Actinomycetota
Clavibacter michiganensis [MDJX]
52724
52637
-
Ser
GGA
[ENA]
¡û
>W1711360783
MDJY01000028
Actinomycetota
Clavibacter michiganensis [MDJY]
45084
44997
-
Ser
GGA
[ENA]
¡û
>W1711360830
MDJZ01000005
Actinomycetota
Clavibacter michiganensis [MDJZ]
390552
390639
+
Ser
GGA
[ENA]
¡û
>W131217935
ATXF01000011
Actinomycetota
Agromyces italicus DSM 16388 [ATXF]
174
87
-
Ser
GGA
[ENA]
¡û
>C006174
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
1018337
1018250
-
Ser
GGA
[Ensembl]
¡û
>WENV180362317
OBNW01114129
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
173
88
-
Ser
GGA
[ENA]
¢þ
>W141212810
AZQZ01000067
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
71504
71417
-
Ser
GGA
[ENA]
¡û
>WENV182540414
OJAJ01000470
[OJAJ] seawater metagenome; Sea water
2015
2102
+
Ser
GGA
[ENA]
¢þ
>WENV182540844
OJAQ01000055
[OJAQ] seawater metagenome; Sea water
9318
9231
-
Ser
GGA
[ENA]
¢þ
>WENV182542853
OJAZ01004133
[OJAZ] seawater metagenome; Sea water
1357
1444
+
Ser
GGA
[ENA]
¢þ
>WENV182544507
OJBG01009999
[OJBG] seawater metagenome; Sea water
509
422
-
Ser
GGA
[ENA]
¢þ
>WENV182549986
OJBZ01001184
[OJBZ] seawater metagenome; Sea water
7618
7705
+
Ser
GGA
[ENA]
¢þ
>WENV182553916
OJCR01053464
[OJCR] seawater metagenome; Sea water
345
260
-
Ser
GGA
[ENA]
¢þ
>WENV182554061
OJCT01000233
[OJCT] seawater metagenome; Sea water
1920
1833
-
Ser
GGA
[ENA]
¢þ
>WENV182557286
OJDI01004744
[OJDI] seawater metagenome; Sea water
111
24
-
Ser
GGA
[ENA]
¢þ
>WENV182561605
OJDX01000045
[OJDX] seawater metagenome; Sea water
19040
19127
+
Ser
GGA
[ENA]
¢þ
>WENV182561919
OJDY01000012
[OJDY] seawater metagenome; Sea water
22709
22796
+
Ser
GGA
[ENA]
¢þ
>WENV182562682
OJEA01000064
[OJEA] seawater metagenome; Sea water
16608
16521
-
Ser
GGA
[ENA]
¢þ
>WENV182563048
OJEB01000016
[OJEB] seawater metagenome; Sea water
22691
22778
+
Ser
GGA
[ENA]
¢þ
>WENV182564076
OJEE01000048
[OJEE] seawater metagenome; Sea water
22690
22777
+
Ser
GGA
[ENA]
¢þ
>WENV182568121
OJEQ01000832
[OJEQ] seawater metagenome; Sea water
1140
1227
+
Ser
GGA
[ENA]
¢þ
>WENV182569010
OJEY01000017
[OJEY] seawater metagenome; Sea water
37895
37982
+
Ser
GGA
[ENA]
¢þ
>WENV182569796
OJFB01000588
[OJFB] seawater metagenome; Sea water
7023
7110
+
Ser
GGA
[ENA]
¢þ
>WENV182571194
OJFG01001368
[OJFG] seawater metagenome; Sea water
510
423
-
Ser
GGA
[ENA]
¢þ
>WENV182574609
OJFS01000107
[OJFS] seawater metagenome; Sea water
4967
4880
-
Ser
GGA
[ENA]
¢þ
>WENV182576711
OJFY01002233
[OJFY] seawater metagenome; Sea water
461
548
+
Ser
GGA
[ENA]
¢þ
>WENV182576862
OJFZ01001084
[OJFZ] seawater metagenome; Sea water
288
201
-
Ser
GGA
[ENA]
¢þ
>WENV182577871
OJGL01001105
[OJGL] seawater metagenome; Sea water
99
12
-
Ser
GGA
[ENA]
¢þ
>WENV182577942
OJGM01000071
[OJGM] seawater metagenome; Sea water
16306
16393
+
Ser
GGA
[ENA]
¢þ
>WENV182580602
OJGW01004526
[OJGW] seawater metagenome; Sea water
1523
1610
+
Ser
GGA
[ENA]
¢þ
>WENV182582107
OJHA01000039
[OJHA] seawater metagenome; Sea water
2638
2725
+
Ser
GGA
[ENA]
¢þ
>WENV182582455
OJHB01000257
[OJHB] seawater metagenome; Sea water
147
234
+
Ser
GGA
[ENA]
¢þ
>WENV182583179
OJHD01000870
[OJHD] seawater metagenome; Sea water
1773
1860
+
Ser
GGA
[ENA]
¢þ
>WENV182586829
OJHK01006569
[OJHK] seawater metagenome; Sea water
423
510
+
Ser
GGA
[ENA]
¢þ
>WENV182587554
OJHN01000035
[OJHN] seawater metagenome; Sea water
16727
16640
-
Ser
GGA
[ENA]
¢þ
>WENV182588550
OJHU01001780
[OJHU] seawater metagenome; Sea water
1104
1191
+
Ser
GGA
[ENA]
¢þ
>WENV182592384
OJIR01000199
[OJIR] seawater metagenome; Sea water
1922
1835
-
Ser
GGA
[ENA]
¢þ
>C08003571
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
175877
175793
-
Ser
GGA
[Ensembl]
¡û
>WENV183054556
OLGU01000151
[OLGU] seawater metagenome; Sea water
18233
18320
+
Ser
GGA
[ENA]
¢þ
>WENV183055013
OLGW01000807
[OLGW] seawater metagenome; Sea water
934
847
-
Ser
GGA
[ENA]
¢þ
>WENV183059083
OLHS01003265
[OLHS] seawater metagenome; Sea water
175
88
-
Ser
GGA
[ENA]
¢þ
>WENV183059234
OLHU01000032
[OLHU] seawater metagenome; Sea water
16888
16801
-
Ser
GGA
[ENA]
¢þ
>WENV183060230
OLHX01000203
[OLHX] seawater metagenome; Sea water
5231
5318
+
Ser
GGA
[ENA]
¢þ
>WENV170572810
FLOH01001317
[FLOH] marine metagenome; water
19746
19661
-
Ser
GGA
[ENA]
¢þ
>WENV170598845
FUWD010051876
[FUWD] metagenome; unknown
214
127
-
Ser
GGA
[ENA]
¢þ
>WENV170605208
FUWD010458033
[FUWD] metagenome; unknown
5
90
+
Ser
GGA
[ENA]
¢þ
>WENV170616226
FUWD012881862
[FUWD] metagenome; unknown
354
267
-
Ser
GGA
[ENA]
¢þ
>WENV170620512
FUWD013032985
[FUWD] metagenome; unknown
593
506
-
Ser
GGA
[ENA]
¢þ
>WENV170624279
FUWD013179002
[FUWD] metagenome; unknown
1094
1007
-
Ser
GGA
[ENA]
¢þ
>WENV170624763
FUWD013186364
[FUWD] metagenome; unknown
1279
1192
-
Ser
GGA
[ENA]
¢þ
>WENV170626689
FUWD013228826
[FUWD] metagenome; unknown
901
988
+
Ser
GGA
[ENA]
¢þ
>WENV170627443
FUWD013232789
[FUWD] metagenome; unknown
317
230
-
Ser
GGA
[ENA]
¢þ
>WENV170628655
FUWD013250436
[FUWD] metagenome; unknown
593
506
-
Ser
GGA
[ENA]
¢þ
>WENV170632562
FUWD013384442
[FUWD] metagenome; unknown
5827
5740
-
Ser
GGA
[ENA]
¢þ
>WENV170632563
FUWD013384443
[FUWD] metagenome; unknown
1094
1007
-
Ser
GGA
[ENA]
¢þ
>WENV170950193
MEHZ011483004
[MEHZ] marine metagenome; marine surface water
1258
1345
+
Ser
GGA
[ENA]
¢þ
>C181048888
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
2428423
2428510
+
Ser
GGA
-
¡û
>C181048931
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
2521246
2521333
+
Ser
GGA
-
¡û
>W1910839681
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
2373913
2373826
-
Ser
GGA
[ENA]
¡û
>W1910839721
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
1965775
1965688
-
Ser
GGA
[ENA]
¡û
>W1910839771
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
913713
913626
-
Ser
GGA
[ENA]
¡û
>W1910839781
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
69973
70060
+
Ser
GGA
[ENA]
¡û
>W1910839826
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
267223
267310
+
Ser
GGA
[ENA]
¡û
>W1911748165
QWDZ01000278
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
2716
2629
-
Ser
GGA
[ENA]
¡û
>W1911748193
QWEA01000244
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
2909
2822
-
Ser
GGA
[ENA]
¡û
>W1911748250
QWEB01000259
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
2420
2507
+
Ser
GGA
[ENA]
¡û
>W1911748271
QWEC01000033
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
15082
15169
+
Ser
GGA
[ENA]
¡û
>W1911748337
QWED01000413
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
1136
1049
-
Ser
GGA
[ENA]
¡û
>W1911748355
QWEE01000028
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
16790
16877
+
Ser
GGA
[ENA]
¡û
>W1911749601
QWGS01000407
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
1285
1372
+
Ser
GGA
[ENA]
¡û
>W1911749646
QWGT01000520
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
355
442
+
Ser
GGA
[ENA]
¡û
>W1911749695
QWGV01000008
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
1189
1102
-
Ser
GGA
[ENA]
¡û
>W1810277206
PSTQ01000005
Actinomycetota
Pseudoclavibacter sp. AY1F1 [PSTQ]
98506
98419
-
Ser
GGA
[ENA]
¡û
>W1810277252
PSTR01000010
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
46615
46528
-
Ser
GGA
[ENA]
¡û
>W1810277298
PSTS01000023
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
49165
49078
-
Ser
GGA
[ENA]
¡û
>W1810277382
PSTU01000015
Actinomycetota
Pseudoclavibacter sp. Z016 [PSTU]
197214
197301
+
Ser
GGA
[ENA]
¡û
>W1810277409
PSTV01000012
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
46048
45961
-
Ser
GGA
[ENA]
¡û
>W1810277453
PSTW01000012
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
113974
113887
-
Ser
GGA
[ENA]
¡û
>W1810277519
PSTX01000016
Actinomycetota
Pseudoclavibacter sp. RFBJ5 [PSTX]
196889
196976
+
Ser
GGA
[ENA]
¡û
>W1810277570
PSTY01000022
Actinomycetota
Pseudoclavibacter sp. RFBH5 [PSTY]
197302
197389
+
Ser
GGA
[ENA]
¡û
>W1810277623
PSTZ01000010
Actinomycetota
Pseudoclavibacter sp. RFBB5 [PSTZ]
170496
170583
+
Ser
GGA
[ENA]
¡û
>W1810277640
PSUA01000005
Actinomycetota
Pseudoclavibacter sp. RFBA6 [PSUA]
313646
313559
-
Ser
GGA
[ENA]
¡û
>W1810282040
PSXX01000005
Actinomycetota
Pseudoclavibacter sp. AY1H1 [PSXX]
200483
200570
+
Ser
GGA
[ENA]
¡û
>W1810282090
PSXY01000020
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
49051
48964
-
Ser
GGA
[ENA]
¡û
>W1810282131
PSXZ01000013
Actinomycetota
Pseudoclavibacter sp. RFBJ3 [PSXZ]
196889
196976
+
Ser
GGA
[ENA]
¡û
>W1810282161
PSYA01000004
Actinomycetota
Pseudoclavibacter sp. RFBI5 [PSYA]
51296
51209
-
Ser
GGA
[ENA]
¡û
>W1810282238
PSYB01000015
Actinomycetota
Pseudoclavibacter sp. RFBI4 [PSYB]
197472
197559
+
Ser
GGA
[ENA]
¡û
>W1810282261
PSYC01000014
Actinomycetota
Pseudoclavibacter sp. RFBG4 [PSYC]
17203
17116
-
Ser
GGA
[ENA]
¡û
>W1810860764
QTTK01000001
Actinomycetota
Clavibacter sp. 199 [QTTK]
226253
226340
+
Ser
GGA
[ENA]
¡û
>SRA1019487
SRR035082.465381
454 Sequencing (SRP001803)
181
94
-
Ser
GGA
[SRA]
>C151075647
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
2508993
2509080
+
Ser
GGA
[Ensembl]
¡û
>SRA1025334
SRR035084.554868
454 Sequencing (SRP001805)
202
287
+
Ser
GGA
[SRA]
>SRA1028073
SRR035086.252886
454 Sequencing (SRP001807)
40
127
+
Ser
GGA
[SRA]
>SRA1031549
SRR035087.447971
454 Sequencing (SRP001808)
156
69
-
Ser
GGA
[SRA]
>SRA1042969
SRR035092.9957
454 Sequencing (SRP001813)
104
191
+
Ser
GGA
[SRA]
>SRA1045688
SRR035093.148588
454 Sequencing (SRP001814)
192
277
+
Ser
GGA
[SRA]
>SRA1046224
SRR035093.256813
454 Sequencing (SRP001814)
296
383
+
Ser
GGA
[SRA]
>SRA1052267
SRR035098.172800
454 Sequencing (SRP001819)
93
180
+
Ser
GGA
[SRA]
>SRA1053013
SRR035098.317956
454 Sequencing (SRP001819)
212
299
+
Ser
GGA
[SRA]
>SRA1053194
SRR035098.359300
454 Sequencing (SRP001819)
214
127
-
Ser
GGA
[SRA]
>SRA1053289
SRR035098.375421
454 Sequencing (SRP001819)
214
127
-
Ser
GGA
[SRA]
>W1511352442
JROD01000007
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
187240
187327
+
Ser
GGA
[ENA]
¡û
>W1511570078
LAKL01000010
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
35688
35601
-
Ser
GGA
[ENA]
¡û
>W1610112248
CZJS01000129
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
5979
6066
+
Ser
GGA
[ENA]
¡û
>W1610112521
CZJY01000035
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
31128
31215
+
Ser
GGA
[ENA]
¡û
>C131019561
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
860492
860405
-
Ser
GGA
[Ensembl]
¡û
>W1610867048
LQXA01000036
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
56487
56400
-
Ser
GGA
[ENA]
¡û
>W1610918520
LSOE01000008
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
46922
46835
-
Ser
GGA
[ENA]
¡û
>W1710114952
CZJS01000129
Actinomycetota
Pseudoclavibacter helvolus [CZJS]
5979
6066
+
Ser
GGA
[ENA]
¡û
>W1710115225
CZJY01000035
Actinomycetota
Pseudoclavibacter helvolus [CZJY]
31128
31215
+
Ser
GGA
[ENA]
¡û
>W1710604664
FVZG01000001
Actinomycetota
Clavibacter michiganensis [FVZG]
797221
797134
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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