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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87261 (12 seq.)
>WENV181696733
OGPD01003834
[OGPD] human gut metagenome; faeces
1040
954
-
Leu
TAA
[ENA]
¡û
>WENV181737653
OGQI01000045
[OGQI] human gut metagenome; faeces
76556
76642
+
Leu
TAA
[ENA]
¡û
>WENV181765838
OGQY01063808
[OGQY] human gut metagenome; faeces
62
148
+
Leu
TAA
[ENA]
¡û
>WENV181782844
OGRL01000078
[OGRL] human gut metagenome; faeces
55464
55378
-
Leu
TAA
[ENA]
¡û
>WENV181815756
OGTL01000073
[OGTL] human gut metagenome; faeces
85828
85742
-
Leu
TAA
[ENA]
¡û
>WENV182445075
OIKU01011611
[OIKU] human gut metagenome; human gut
164
78
-
Leu
TAA
[ENA]
¡û
>WENV182668357
OJNJ01000203
[OJNJ] human gut metagenome; feces
24453
24367
-
Leu
TAA
[ENA]
¡û
>WENV182670406
OJNL01000044
[OJNL] human gut metagenome; feces
87369
87283
-
Leu
TAA
[ENA]
¡û
>WENV182884257
OKSC01000115
[OKSC] human gut metagenome; faeces
4451
4365
-
Leu
TAA
[ENA]
¡û
>WENV182993215
OLAX01019602
[OLAX] human gut metagenome; human gut
285
199
-
Leu
TAA
[ENA]
¡û
>WENV183178532
OLPH01000160
[OLPH] human gut metagenome; faeces
87187
87101
-
Leu
TAA
[ENA]
¡û
>WENV183292019
OLSJ01000066
[OLSJ] human gut metagenome; faeces
84009
83923
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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