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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.872968 (74 seq.)
>W1710860724
LMDC01000005
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
375
302
-
Gly
TCC
[ENA]
¡û
>W1710861120
LMDK01000008
Betaproteobacteria
Pelomonas sp. Root1237 [LMDK]
33102
33175
+
Gly
TCC
[ENA]
¡û
>W1710861662
LMDU01000008
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
400
327
-
Gly
TCC
[ENA]
¡û
>W1710864115
LMFP01000032
Betaproteobacteria
Pelomonas sp. Root1444 [LMFP]
89181
89108
-
Gly
TCC
[ENA]
¡û
>W1710866053
LMHE01000006
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
372
299
-
Gly
TCC
[ENA]
¡û
>W1711259925
LYVQ01000206
Betaproteobacteria
Pelomonas sp. KK5 [LYVQ]
387
314
-
Gly
TCC
[ENA]
¡û
>W131237199
AUNN01000083
Betaproteobacteria
Pelomonas sp. JGI 001013-K11 [AUNN]
14064
13991
-
Gly
TCC
[ENA]
¡û
>W1712102906
NIOE01000007
Betaproteobacteria
Roseateles noduli HZ7 [NIOE]
517457
517530
+
Gly
TCC
[ENA]
¡û
>W1712102990
NIOF01000029
Betaproteobacteria
Roseateles aquatilis [NIOF]
17713
17786
+
Gly
TCC
[ENA]
¡û
>W1712103028
NIOG01000005
Betaproteobacteria
Roseateles terrae [NIOG]
470267
470340
+
Gly
TCC
[ENA]
¡û
>W1712105744
NISI01000023
Betaproteobacteria
Roseateles puraquae [NISI]
30566
30639
+
Gly
TCC
[ENA]
¡û
>WENV180016811
FSVW01002886
[FSVW] metagenome; soil
83
10
-
Gly
TCC
[ENA]
¡û
>WENV180019269
FTBS01000279
[FTBS] metagenome; soil
38055
38128
+
Gly
TCC
[ENA]
¡û
>WENV180028940
FTJH01652391
[FTJH] metagenome; soil
1
74
+
Gly
TCC
[ENA]
¡û
>WENV180249520
OBEQ010204761
[OBEQ] groundwater metagenome; groundwater
379
306
-
Gly
TCC
[ENA]
¡û
>WENV180285874
OBID01781130
[OBID] metagenome; sludge
180
107
-
Gly
TCC
[ENA]
¡û
>WENV181368030
OFQG01000001
[OFQG] freshwater metagenome; Freshwater Lake
1746
1819
+
Gly
TCC
[ENA]
¡û
>WENV181377841
OFRA01036916
[OFRA] wastewater metagenome; Lake Maggiore Verbania
712
785
+
Gly
TCC
[ENA]
¡û
>W141223631
BADL01000074
Betaproteobacteria
Ideonella sp. B508-1 [BADL]
5038
5111
+
Gly
TCC
[ENA]
¡û
>WENV183697291
OUNJ010277733
[OUNJ] metagenome; soil
158
231
+
Gly
TCC
[ENA]
¡û
>WENV170639651
JFJP01005635
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
328
255
-
Gly
TCC
[ENA]
¡û
>C181064516
CP022423
Betaproteobacteria
Vitreoscilla filiformis ATCC 15551 [CP022423]
841925
841998
+
Gly
TCC
-
¡û
>W1910888509
NERV01000004
Betaproteobacteria
Limnohabitans sp. T6-5 [NERV]
272493
272420
-
Gly
TCC
[ENA]
¡û
>W1910888574
NERX01000002
Betaproteobacteria
Limnohabitans sp. MMS-10A-192 [NERX]
469385
469458
+
Gly
TCC
[ENA]
¡û
>W1910888660
NERZ01000003
Betaproteobacteria
Limnohabitans sp. MMS-10A-160 [NERZ]
264
191
-
Gly
TCC
[ENA]
¡û
>W1910888775
NESC01000002
Betaproteobacteria
Limnohabitans sp. Jir72 [NESC]
146098
146025
-
Gly
TCC
[ENA]
¡û
>W1911647490
QAJN01000013
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
350
277
-
Gly
TCC
[ENA]
¡û
>W1911766095
QXDH01000004
Betaproteobacteria
Pelomonas sp. BT06 [QXDH]
36938
37011
+
Gly
TCC
[ENA]
¡û
>W1810081336
PEOG01000010
Betaproteobacteria
Roseateles chitinivorans HWN-4 [PEOG]
94844
94771
-
Gly
TCC
[ENA]
¡û
>W1810222839
POSP01000003
Betaproteobacteria
Paucibacter aquatile CR182 [POSP]
3783210
3783283
+
Gly
TCC
[ENA]
¡û
>W1810475747
QAJF01000549
Betaproteobacteria
Pelomonas sp. HMWF004 [QAJF]
4724
4797
+
Gly
TCC
[ENA]
¡û
>W1810884640
QUMT01000003
Betaproteobacteria
Roseateles depolymerans DSM 11813 [QUMT]
708702
708629
-
Gly
TCC
[ENA]
¡û
>W2010708627
JACHLP010000003
Betaproteobacteria
Paucibacter oligotrophus S00239 [JACHLP]
840
767
-
Gly
TCC
[ENA]
¡û
>W2010716758
JACHXO010000003
Betaproteobacteria
Roseateles terrae CECT 7247 [JACHXO]
130146
130073
-
Gly
TCC
[ENA]
¡û
>W2010718388
JACHYS010000003
Betaproteobacteria
Mitsuaria sp. BK037 [JACHYS]
370
297
-
Gly
TCC
[ENA]
¡û
>W2010718445
JACHYT010000002
Betaproteobacteria
Mitsuaria sp. BK041 [JACHYT]
1047074
1047001
-
Gly
TCC
[ENA]
¡û
>W2010718503
JACHYU010000002
Betaproteobacteria
Mitsuaria sp. BK045 [JACHYU]
1047074
1047001
-
Gly
TCC
[ENA]
¡û
>W2010742996
JACJUG010000008
Betaproteobacteria
Mitsuaria sp. WAJ17 [JACJUG]
67311
67384
+
Gly
TCC
[ENA]
¡û
>W2010953367
NERV01000004
Betaproteobacteria
Limnohabitans sp. T6-5 [NERV]
272493
272420
-
Gly
TCC
[ENA]
¡û
>W2010953432
NERX01000002
Betaproteobacteria
Limnohabitans sp. MMS-10A-192 [NERX]
469385
469458
+
Gly
TCC
[ENA]
¡û
>W2010953518
NERZ01000003
Betaproteobacteria
Limnohabitans sp. MMS-10A-160 [NERZ]
264
191
-
Gly
TCC
[ENA]
¡û
>W2010953633
NESC01000002
Betaproteobacteria
Limnohabitans sp. Jir72 [NESC]
146098
146025
-
Gly
TCC
[ENA]
¡û
>W2011235474
QAJN01000013
Betaproteobacteria
Paucibacter sp. KBW04 [QAJN]
350
277
-
Gly
TCC
[ENA]
¡û
>W2011324538
QXDH01000004
Betaproteobacteria
Pelomonas sp. BT06 [QXDH]
36938
37011
+
Gly
TCC
[ENA]
¡û
>W2011540216
SCOI01000008
Betaproteobacteria
Burkholderiales bacterium C2 [SCOI]
263017
263090
+
Gly
TCC
[ENA]
¡û
>W2011629787
SMBU01000046
Betaproteobacteria
Pelomonas saccharophila DSM 654 [SMBU]
379
306
-
Gly
TCC
[ENA]
¡û
>W2011649696
SNXS01000008
Betaproteobacteria
Paucibacter toxinivorans DSM 16998 [SNXS]
147385
147312
-
Gly
TCC
[ENA]
¡û
>W2012037257
VIDT01000016
Betaproteobacteria
Ideonella azotifigens DSM 21438 [VIDT]
23844
23771
-
Gly
TCC
[ENA]
¡û
>W2012108167
VOSR01000268
Betaproteobacteria
Mitsuaria sp. TWR114 [VOSR]
7865
7938
+
Gly
TCC
[ENA]
¡û
>W2012218507
VZPB01000071
Betaproteobacteria
Ideonella dechloratans CCUG 30977 [VZPB]
420
347
-
Gly
TCC
[ENA]
¡û
>W2110287176
JACYFT010000001
Betaproteobacteria
Limnohabitans sp. JUR4 [JACYFT]
931661
931588
-
Gly
TCC
[ENA]
¡û
>W2110576327
JAGWCB010000010
Betaproteobacteria
Ideonella sp. B7 [JAGWCB]
775522
775449
-
Gly
TCC
[ENA]
¡û
>W2110592229
JAHCDN010000005
Betaproteobacteria
Variovorax sp. PCZ-1 [JAHCDN]
48167
48240
+
Gly
TCC
[ENA]
¡û
>W2110692205
JAIQCM010000018
Betaproteobacteria
Paucibacter aquatile DH15 [JAIQCM]
426
353
-
Gly
TCC
[ENA]
¡û
>C211081519
CP049919
Betaproteobacteria
Kinneretia sp. DAIF2 [CP049919]
816745
816818
+
Gly
TCC
-
¡û
>C231249255
CP088081
Betaproteobacteria
Ideonella dechloratans CCUG 30977 [CP088081]
3345287
3345214
-
Gly
TCC
-
¡û
>C231494071
CP104562
Betaproteobacteria
Roseateles sp. BIM B-1768 [CP104562]
689151
689224
+
Gly
TCC
-
¡û
>C241253394
CP124551
Betaproteobacteria
Paucibacter aquatile DH15 [CP124551]
876704
876777
+
Gly
TCC
-
¡û
>W1510720142
CXOO01000022
Betaproteobacteria
Limnohabitans sp. DM1 [CXOO]
73658
73585
-
Gly
TCC
[ENA]
¡û
>W1511691403
LFYT01000006
Betaproteobacteria
Limnohabitans planktonicus II-D5 [LFYT]
223186
223113
-
Gly
TCC
[ENA]
¡û
>W11187688
CAFG01000382
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
299
226
-
Gly
TCC
[ENA]
¡û
>C161036451
CP011514
Betaproteobacteria
Mitsuaria sp. 7 [CP011514]
4629611
4629538
-
Gly
TCC
-
¡û
>C161060263
CP013729
Betaproteobacteria
Roseateles depolymerans KCTC 42856 [CP013729]
626658
626731
+
Gly
TCC
[Ensembl]
¡û
>W121036327
AHLZ01000001
Betaproteobacteria
Burkholderiales bacterium JOSHI_001 [AHLZ]
378500
378573
+
Gly
TCC
[ENA]
¡û
>W121127049
CAFG01000382
Betaproteobacteria
Mitsuaria sp. H24L5A [CAFG]
299
226
-
Gly
TCC
[ENA]
¡û
>W1610076253
BCYP01000024
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
199401
199474
+
Gly
TCC
[ENA]
¡û
>W1610723070
LMDC01000005
Betaproteobacteria
Pelomonas sp. Root1217 [LMDC]
375
302
-
Gly
TCC
[ENA]
¡û
>W1610723466
LMDK01000008
Betaproteobacteria
Pelomonas sp. Root1237 [LMDK]
33102
33175
+
Gly
TCC
[ENA]
¡û
>W1610724008
LMDU01000008
Betaproteobacteria
Pelomonas sp. Root405 [LMDU]
400
327
-
Gly
TCC
[ENA]
¡û
>W1610726461
LMFP01000032
Betaproteobacteria
Pelomonas sp. Root1444 [LMFP]
89181
89108
-
Gly
TCC
[ENA]
¡û
>W1610728399
LMHE01000006
Betaproteobacteria
Pelomonas sp. Root662 [LMHE]
372
299
-
Gly
TCC
[ENA]
¡û
>W1710074068
BCYP01000024
Betaproteobacteria
Roseateles chitosanitabidus NBRC 102408 [BCYP]
199401
199474
+
Gly
TCC
[ENA]
¡û
>W1710544480
FOAV01000010
Betaproteobacteria
Roseateles sp. YR242 [FOAV]
108772
108699
-
Gly
TCC
[ENA]
¡û
>W1710575452
FOZE01000002
Betaproteobacteria
Mitsuaria sp. PDC51 [FOZE]
999134
999061
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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