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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.872985 (58 seq.)
>W1710786922
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2484398
2484469
+
Gly
TCC
[ENA]
¡û
>W1711627057
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
4868283
4868210
-
Gly
TCC
[ENA]
¡û
>C171109517
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
3892720
3892647
-
Gly
TCC
-
¡û
>WENV180023356
FTHV01001182
[FTHV] metagenome; soil
2876
2947
+
Gly
TCC
[ENA]
¡û
>WENV180023485
FTHY01001181
[FTHY] metagenome; soil
2876
2947
+
Gly
TCC
[ENA]
¡û
>WENV180024710
FTIJ01000387
[FTIJ] metagenome; soil
3673
3602
-
Gly
TCC
[ENA]
¡û
>WENV180033192
FTKF01025877
[FTKF] metagenome; soil
1555
1484
-
Gly
TCC
[ENA]
¡û
>WENV180033266
FTKF01193628
[FTKF] metagenome; soil
76
147
+
Gly
TCC
[ENA]
¡û
>WENV180033606
FTKL01000403
[FTKL] metagenome; soil
31205
31132
-
Gly
TCC
[ENA]
¡û
>W141282716
JAIY01000007
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
42254
42181
-
Gly
TCC
[ENA]
¡û
>WENV170565623
FJVZ01001284
[FJVZ] metagenome; soil
6264
6335
+
Gly
TCC
[ENA]
¡û
>W141755561
JNWQ01000050
Actinomycetota
Streptomyces novaecaesareae [JNWQ]
47252
47323
+
Gly
TCC
[ENA]
¡û
>W141755637
JNWR01000025
Actinomycetota
Kitasatospora aureofaciens [JNWR]
57183
57256
+
Gly
TCC
[ENA]
¡û
>W141757009
JNXO01000788
Actinomycetota
Kitasatospora misakiensis [JNXO]
1669
1596
-
Gly
TCC
[ENA]
¡û
>W141759680
JNZN01000847
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
5957
6028
+
Gly
TCC
[ENA]
¡û
>W141761763
JOAY01000009
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
90729
90800
+
Gly
TCC
[ENA]
¡û
>W141761928
JOBB01001209
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
191
118
-
Gly
TCC
[ENA]
¡û
>W141763727
JOCF01000065
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
13384
13457
+
Gly
TCC
[ENA]
¡û
>W141766044
JODS01000032
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
42220
42147
-
Gly
TCC
[ENA]
¡û
>W141767564
JOER01000083
Actinomycetota
Kitasatospora aureofaciens [JOER]
4121
4048
-
Gly
TCC
[ENA]
¡û
>W141768749
JOFK01000018
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
59353
59426
+
Gly
TCC
[ENA]
¡û
>W141770089
JOGG01000015
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
31603
31530
-
Gly
TCC
[ENA]
¡û
>W141771637
JOHH01001936
Actinomycetota
Streptomyces sp. NRRL B-2030 [JOHH]
5143
5214
+
Gly
TCC
[ENA]
¡û
>W141771974
JOHN01000045
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
18187
18114
-
Gly
TCC
[ENA]
¡û
>W141772013
JOHO01000005
Actinomycetota
Streptomyces sp. NRRL S-350 [JOHO]
179691
179762
+
Gly
TCC
[ENA]
¡û
>W1911494830
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
5064602
5064531
-
Gly
TCC
[ENA]
¡û
>W1810907936
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
4370233
4370304
+
Gly
TCC
[ENA]
¡û
>W2010705848
JACHJV010000001
Actinomycetota
Kitasatospora kifunensis DSM 41654 [JACHJV]
2584687
2584758
+
Gly
TCC
[ENA]
¡û
>W2011155734
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
5064602
5064531
-
Gly
TCC
[ENA]
¡û
>W2011388908
RBXE01000001
Actinomycetota
Streptomyces sp. 1114.5 [RBXE]
2657742
2657671
-
Gly
TCC
[ENA]
¡û
>W2011491095
RSFG01000003
Actinomycetota
Streptomyces sp. CB01881 [RSFG]
259938
259865
-
Gly
TCC
[ENA]
¡û
>W2012048937
VIWT01000001
Actinomycetota
Kitasatospora viridis DSM 44826 [VIWT]
4306790
4306718
-
Gly
TCC
[ENA]
¡û
>W2012230624
WBOF01000001
Actinomycetota
Streptomyces kaniharaensis SF-557 [WBOF]
1748062
1748133
+
Gly
TCC
[ENA]
¡û
>W2110042545
BMUB01000018
Actinomycetota
Kitasatospora psammotica JCM 4434 [BMUB]
46173
46101
-
Gly
TCC
[ENA]
¡û
>W2110053847
BNBY01000028
Actinomycetota
Kitasatospora xanthocidica JCM 4862 [BNBY]
59530
59602
+
Gly
TCC
[ENA]
¡û
>W2110511725
JAFLNG010000027
Actinomycetota
Streptomyces sp. FH025 [JAFLNG]
10598
10669
+
Gly
TCC
[ENA]
¡û
>W2110641925
JAHSQD010000058
Actinomycetota
Streptomyces sp. LS1784 [JAHSQD]
3886
3815
-
Gly
TCC
[ENA]
¡û
>W2110645402
JAHTKP010000043
Actinomycetota
Kitasatospora aureofaciens CPD02 [JAHTKP]
31305
31376
+
Gly
TCC
[ENA]
¡û
>C201037033
CP023698
Actinomycetota
Streptomyces viridifaciens ATCC 11989 [CP023698]
5100472
5100400
-
Gly
TCC
-
¡û
>W2110746807
LFMD02000003
Actinomycetota
Kitasatospora sp. SUK 42 [LFMD]
999134
999205
+
Gly
TCC
[ENA]
¡û
>C231284956
CP090841
Actinomycetota
Streptomyces viridifaciens DSM 40239 [CP090841]
4986730
4986658
-
Gly
TCC
-
¡û
>W2110751235
MSJQ01000126
Actinomycetota
Streptomyces sp. CBMA156 [MSJQ]
5287
5358
+
Gly
TCC
[ENA]
¡û
>C231566227
CP115450
Actinomycetota
Kitasatospora sp. HUAS 3-15 [CP115450]
5725562
5725490
-
Gly
TCC
-
¡û
>C241202520
CP107904
Actinomycetota
Kitasatospora sp. NBC_00458 [CP107904]
3126562
3126635
+
Gly
TCC
-
¡û
>C241208720
CP108404
Actinomycetota
Kitasatospora sp. NBC_01302 [CP108404]
6272397
6272325
-
Gly
TCC
-
¡û
>C241209637
CP108458
Actinomycetota
Kitasatospora sp. NBC_01266 [CP108458]
3033662
3033733
+
Gly
TCC
-
¡û
>C241210143
CP108476
Actinomycetota
Kitasatospora sp. NBC_01250 [CP108476]
6125386
6125314
-
Gly
TCC
-
¡û
>W2130032938
JAGIYX010000035
Actinomycetota
Kitasatospora sp. RG8 [JAGIYX]
44020
44093
+
Gly
TCC
[ENA]
¡û
>C241321811
CP134877
Actinomycetota
Kitasatospora sp. CM 4170 [CP134877]
3397006
3397078
+
Gly
TCC
-
¡û
>W1511311686
JPRF01000485
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
14516
14443
-
Gly
TCC
[ENA]
¡û
>W1511545192
JZKG01000055
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
16855
16928
+
Gly
TCC
[ENA]
¡û
>W1511545242
JZKH01000027
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
63313
63386
+
Gly
TCC
[ENA]
¡û
>W1511555655
JZWY01000489
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
1677
1604
-
Gly
TCC
[ENA]
¡û
>W1511590488
LBHA01000513
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
11707
11780
+
Gly
TCC
[ENA]
¡û
>W1511687884
LFVW01000001
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
18904
18975
+
Gly
TCC
[ENA]
¡û
>W1511696767
LGDO01000007
Actinomycetota
Streptomyces sp. XY431 [LGDO]
5486
5413
-
Gly
TCC
[ENA]
¡û
>W1610650777
LJJF01000001
Actinomycetota
Streptomyces sp. MJM8645 [LJJF]
2484398
2484469
+
Gly
TCC
[ENA]
¡û
>W1710765801
LIPD01000001
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
62897
62826
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK