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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.873262 (73 seq.)
>W1710863683
LMFI01000001
Actinomycetota
Nocardioides sp. Root140 [LMFI]
900818
900745
-
Cys
GCA
[ENA]
¡û
>W1710864915
LMGG01000004
Actinomycetota
Nocardioides sp. Root151 [LMGG]
540318
540245
-
Cys
GCA
[ENA]
¡û
>W1710874049
LMNH01000001
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
1011509
1011438
-
Cys
GCA
[ENA]
¡û
>W1710874870
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
123405
123476
+
Cys
GCA
[ENA]
¡û
>W1710880885
LMSQ01000017
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
749589
749516
-
Cys
GCA
[ENA]
¡û
>W131219705
ATYU01000001
Actinomycetota
Acidipropionibacterium acidipropionici DSM 4900 [ATYU]
120435
120364
-
Cys
GCA
[ENA]
¡û
>W131224910
AUDD01000008
Actinomycetota
Acidipropionibacterium jensenii DSM 20535 [AUDD]
96549
96478
-
Cys
GCA
[ENA]
¡û
>W131227905
AUFN01000014
Actinomycetota
Nocardioides alkalitolerans DSM 16699 [AUFN]
46041
46114
+
Cys
GCA
[ENA]
¡û
>C171044675
CP015970
Actinomycetota
Acidipropionibacterium acidipropionici F3E8 [CP015970]
930920
930991
+
Cys
GCA
-
¡û
>C171092754
CP019400
Actinomycetota
Acidipropionibacterium acidipropionici WSH1105 [CP019400]
325146
325075
-
Cys
GCA
-
¡û
>C171130933
LT706985
Actinomycetota
Vaginimicrobium propionicum Marseille-P3275 [LT706985]
719613
719684
+
Cys
GCA
-
¡û
>WENV180000048
CZKA01000074
[CZKA] metagenome; liquid mineral medium
2059
2130
+
Cys
GCA
[ENA]
¡û
>WENV180030861
FTJN01213556
[FTJN] metagenome; soil
130
59
-
Cys
GCA
[ENA]
¡û
>WENV180357176
OBNM01044841
[OBNM] marine metagenome; none
309
238
-
Cys
GCA
[ENA]
¡û
>WENV181311750
OFJB01010808
[OFJB] sludge metagenome; sludge
710
639
-
Cys
GCA
[ENA]
¡û
>WENV183709051
PDWI01023343
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
123
194
+
Cys
GCA
[ENA]
¡û
>WENV183712644
PDWI01108229
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1451
1522
+
Cys
GCA
[ENA]
¡û
>C191030079
CP025198
Actinomycetota
Acidipropionibacterium virtanenii JS278 [CP025198]
1922250
1922321
+
Cys
GCA
-
¡û
>C191036543
CP025570
Actinomycetota
Acidipropionibacterium jensenii JS280 [CP025570]
1552522
1552593
+
Cys
GCA
-
¡û
>C191036612
CP025571
Actinomycetota
Acidipropionibacterium jensenii JS279 [CP025571]
1579858
1579787
-
Cys
GCA
-
¡û
>C191073497
CP031057
Actinomycetota
Acidipropionibacterium acidipropionici WGS7 [CP031057]
1945378
1945307
-
Cys
GCA
-
¡û
>C191180453
CP040634
Actinomycetota
Acidipropionibacterium acidipropionici FAM 19036 [CP040634]
1584970
1585041
+
Cys
GCA
-
¡û
>C191180516
CP040635
Actinomycetota
Acidipropionibacterium jensenii FAM 19038 [CP040635]
2681762
2681833
+
Cys
GCA
-
¡û
>C191211306
LR134473
Actinomycetota
Acidipropionibacterium jensenii NCTC13652 [LR134473]
409639
409710
+
Cys
GCA
-
¡û
>W1910141221
BIFF01000001
Actinomycetota
Nocardioides sp. LS1 [BIFF]
823229
823158
-
Cys
GCA
[ENA]
¡û
>W2010083028
BIFF01000001
Actinomycetota
Nocardioides sp. LS1 [BIFF]
823229
823158
-
Cys
GCA
[ENA]
¡û
>W2010471677
JAAGXA010000001
Actinomycetota
Nocardioides zeae JCM 30728 [JAAGXA]
631915
631844
-
Cys
GCA
[ENA]
¡û
>W2010668564
JACBZQ010000001
Actinomycetota
Microlunatus terrae DSM 26486 [JACBZQ]
867377
867448
+
Cys
GCA
[ENA]
¡û
>W2010668675
JACBZS010000001
Actinomycetota
Naumannella cuiyingiana DSM 103164 [JACBZS]
3406606
3406535
-
Cys
GCA
[ENA]
¡û
>W2010669182
JACCAD010000001
Actinomycetota
Nocardioides lianchengensis CGMCC 4.6858 [JACCAD]
979283
979212
-
Cys
GCA
[ENA]
¡û
>W2010670710
JACCBE010000001
Actinomycetota
Nocardioides marinisabuli DSM 18965 [JACCBE]
3194001
3193930
-
Cys
GCA
[ENA]
¡û
>W2010670785
JACCBG010000001
Actinomycetota
Nocardioides panaciterrulae DSM 21350 [JACCBG]
2341203
2341274
+
Cys
GCA
[ENA]
¡û
>W2010692053
JACGXA010000001
Actinomycetota
Nocardioides ginsengisegetis DSM 21349 [JACGXA]
1403855
1403784
-
Cys
GCA
[ENA]
¡û
>W2010744210
JACKXE010000002
Actinomycetota
Nocardioides sp. KIGAM211 [JACKXE]
126694
126765
+
Cys
GCA
[ENA]
¡û
>W2011549811
SDPU01000027
Actinomycetota
Nocardioides iriomotensis NBRC 105384 [SDPU]
9588
9659
+
Cys
GCA
[ENA]
¡û
>W2011654105
SOAW01000001
Actinomycetota
Naumannella halotolerans DSM 24323 [SOAW]
967017
966946
-
Cys
GCA
[ENA]
¡û
>W2012030032
VHIB01000011
Actinomycetota
Marmoricola sp. YIM 730233 [VHIB]
218178
218249
+
Cys
GCA
[ENA]
¡û
>ENV09003586
ADGO01095698
Compost metagenome contig00001
250
321
+
Cys
GCA
[ENA]
¡û
>W2110133169
CAKASO010000011
Actinomycetota
Nocardioides sp. Leaf374 [CAKASO]
75790
75719
-
Cys
GCA
[ENA]
¡û
>W2110201551
JACDTV010000008
Actinomycetota
Nocardioides salarius DSM 18239 [JACDTV]
171936
171865
-
Cys
GCA
[ENA]
¡û
>W2110303560
JADCLL010000005
Actinomycetota
Nocardioides kribbensis DSM 16314 [JADCLL]
85503
85574
+
Cys
GCA
[ENA]
¡û
>W2110303602
JADCLM010000008
Actinomycetota
Nocardioides salarius DSM 18239 [JADCLM]
171936
171865
-
Cys
GCA
[ENA]
¡û
>W2110326531
JADIVZ010000004
Actinomycetota
Nocardioides acrostichi CBS4Y-1 [JADIVZ]
246245
246174
-
Cys
GCA
[ENA]
¡û
>W2110458379
JAFBBZ010000001
Actinomycetota
Nocardioides salarius DSM 18239 [JAFBBZ]
351679
351750
+
Cys
GCA
[ENA]
¡û
>W2110669930
JAIEZQ010000002
Actinomycetota
Nocardioides sp. WL0053 [JAIEZQ]
1421764
1421693
-
Cys
GCA
[ENA]
¡û
>C211137478
CP060713
Actinomycetota
Nocardioides mesophilus KACC 16243 [CP060713]
3953454
3953383
-
Cys
GCA
-
¡û
>C211350193
CP077062
Actinomycetota
Nocardioides sp. G188 [CP077062]
1269589
1269518
-
Cys
GCA
-
¡û
>C241138139
CP049867
Actinomycetota
Nocardioides sp. HDW12B [CP049867]
2171378
2171449
+
Cys
GCA
-
¡û
>C241176400
CP059163
Actinomycetota
Nocardioides marinisabuli DSM 18965 [CP059163]
3431955
3431884
-
Cys
GCA
-
¡û
>C241176442
CP059164
Actinomycetota
Nocardioides ungokensis LMG 28591 [CP059164]
2747800
2747871
+
Cys
GCA
-
¡û
>W2310010968
BNET01000007
Actinomycetota
Nocardioides sp. OK12 [BNET]
125242
125313
+
Cys
GCA
[ENA]
¡û
>W2310029157
BSTA01000007
Actinomycetota
Kineosporia sp. NBRC 101677 [BSTA]
232252
232324
+
Cys
GCA
[ENA]
¡û
>W2310029160
BSTA01000007
Actinomycetota
Kineosporia sp. NBRC 101677 [BSTA]
233088
233159
+
Cys
GCA
[ENA]
¡û
>C161051576
CP013126
Actinomycetota
Acidipropionibacterium acidipropionici CGMCC 1.2230 [CP013126]
2964952
2965023
+
Cys
GCA
-
¡û
>C161071850
CP014352
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 55737 [CP014352]
632279
632350
+
Cys
GCA
[Ensembl]
¡û
>C161082882
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
3086334
3086263
-
Cys
GCA
[Ensembl]
¡û
>W1610048765
BBEJ01001111
Actinomycetota
Nocardioides sp. DN36 [BBEJ]
331
258
-
Cys
GCA
[ENA]
¡û
>W1610052804
BBIF01000327
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
2145
2218
+
Cys
GCA
[ENA]
¡û
>W1610052807
BBIF01000327
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
2980
3053
+
Cys
GCA
[ENA]
¡û
>W1610068474
BCRJ01000018
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
10967
11040
+
Cys
GCA
[ENA]
¡û
>C131003883
CP003493
Actinomycetota
Acidipropionibacterium acidipropionici ATCC 4875 [CP003493]
1744432
1744361
-
Cys
GCA
[Ensembl]
¡û
>W1610726029
LMFI01000001
Actinomycetota
Nocardioides sp. Root140 [LMFI]
900818
900745
-
Cys
GCA
[ENA]
¡û
>W1610727261
LMGG01000004
Actinomycetota
Nocardioides sp. Root151 [LMGG]
540318
540245
-
Cys
GCA
[ENA]
¡û
>W1610736395
LMNH01000001
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
1011509
1011438
-
Cys
GCA
[ENA]
¡û
>W1610737216
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
123405
123476
+
Cys
GCA
[ENA]
¡û
>W1610743231
LMSQ01000017
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
749589
749516
-
Cys
GCA
[ENA]
¡û
>W1710045237
BBEJ01001111
Actinomycetota
Nocardioides sp. DN36 [BBEJ]
331
258
-
Cys
GCA
[ENA]
¡û
>W1710049182
BBIF01000327
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
2145
2218
+
Cys
GCA
[ENA]
¡û
>W1710049185
BBIF01000327
Actinomycetota
Kineosporia rhizophila JCM 9960 [BBIF]
2980
3053
+
Cys
GCA
[ENA]
¡û
>W1710065847
BCRJ01000018
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
10967
11040
+
Cys
GCA
[ENA]
¡û
>W1710083197
BDJE01000017
Actinomycetota
Nocardioides sp. PD653-B2 [BDJE]
104658
104585
-
Cys
GCA
[ENA]
¡û
>W1710083322
BDJG01000024
Actinomycetota
Nocardioides sp. PD653 [BDJG]
118127
118200
+
Cys
GCA
[ENA]
¡û
>W1710512555
FMZM01000012
Actinomycetota
Nocardioides lianchengensis [FMZM]
60819
60890
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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