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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.874267 (44 seq.)
>W1710798623
LJTT01000004
Betaproteobacteria
Betaproteobacteria bacterium SG8_41 [LJTT]
66721
66794
+
Cys
GCA
[ENA]
¡û
>W131043714
AMPR01000329
Betaproteobacteria
Cupriavidus sp. HPC(L) [AMPR]
1970
2043
+
Cys
GCA
[ENA]
¡û
>W1711168302
LVXY01000005
Betaproteobacteria
Cupriavidus gilardii [LVXY]
286960
287033
+
Cys
GCA
[ENA]
¡û
>W131229721
AUGZ01000012
Betaproteobacteria
Paludibacterium yongneupense DSM 18731 [AUGZ]
33997
33924
-
Cys
GCA
[ENA]
¡û
>WENV180371688
OBOI01008164
[OBOI] sediment metagenome; sediment
223
150
-
Cys
GCA
[ENA]
¡û
>WENV181170144
OEIV010026567
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
50
123
+
Cys
GCA
[ENA]
¡û
>WENV183664486
ORJL010384510
[ORJL] groundwater metagenome; groundwater
651
578
-
Cys
GCA
[ENA]
¡û
>WENV183665284
ORJL010454309
[ORJL] groundwater metagenome; groundwater
75
2
-
Cys
GCA
[ENA]
¡û
>WENV183667479
ORJL010653258
[ORJL] groundwater metagenome; groundwater
6475
6548
+
Cys
GCA
[ENA]
¡û
>WENV183670981
ORJL011012142
[ORJL] groundwater metagenome; groundwater
1101
1028
-
Cys
GCA
[ENA]
¡û
>WENV183674314
ORJL011373472
[ORJL] groundwater metagenome; groundwater
105
178
+
Cys
GCA
[ENA]
¡û
>WENV183677949
ORJL011816282
[ORJL] groundwater metagenome; groundwater
744
817
+
Cys
GCA
[ENA]
¡û
>WENV183686604
ORMF011027396
[ORMF] groundwater metagenome; groundwater
11373
11300
-
Cys
GCA
[ENA]
¡û
>WENV183686939
ORMF011073742
[ORMF] groundwater metagenome; groundwater
157
230
+
Cys
GCA
[ENA]
¡û
>WENV183689776
ORMF011490458
[ORMF] groundwater metagenome; groundwater
3111
3038
-
Cys
GCA
[ENA]
¡û
>WENV170011850
APMI01096674
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2230
2157
-
Cys
GCA
[ENA]
¡û
>WENV170651662
JRYG01000289
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
20638
20565
-
Cys
GCA
[ENA]
¡û
>WENV170652618
JRYH01009202
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
675
602
-
Cys
GCA
[ENA]
¡û
>WENV170654304
JRYK01074752
[JRYK] activated sludge metagenome; activated biomass of a wastewaster treatment plant treating hydrocarbon contaminated
627
554
-
Cys
GCA
[ENA]
¡û
>WENV170709682
LNFM01000583
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8534
8607
+
Cys
GCA
[ENA]
¡û
>WENV170965483
MTEU01003088
[MTEU] soil metagenome; naturally attenuated soil
7575
7502
-
Cys
GCA
[ENA]
¡û
>WENV170965722
MTEV01001009
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
226
299
+
Cys
GCA
[ENA]
¡û
>WENV170966518
MTEX01012339
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
1347
1274
-
Cys
GCA
[ENA]
¡û
>W1910699496
MERK01000169
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 [MERK]
197
270
+
Cys
GCA
[ENA]
¡û
>C151070020
CP010516
Betaproteobacteria
Cupriavidus gilardii CR3 [CP010516, CP010517]
2241152
2241079
-
Cys
GCA
-
¡û
>W2010592078
JABEMD010000032
Betaproteobacteria
Cupriavidus gilardii ATCC 700815 [JABEMD]
51041
50968
-
Cys
GCA
[ENA]
¡û
>W2010633446
JABTYE010000032
Betaproteobacteria
Cupriavidus gilardii USM5 [JABTYE]
34638
34711
+
Cys
GCA
[ENA]
¡û
>W2010832922
MERK01000169
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 [MERK]
197
270
+
Cys
GCA
[ENA]
¡û
>W2011652268
SNZP01000009
Betaproteobacteria
Paludibacterium purpuratum CECT 8976 [SNZP]
132632
132559
-
Cys
GCA
[ENA]
¡û
>W2012080211
VLJN01000018
Betaproteobacteria
Cupriavidus gilardii J11 [VLJN]
59263
59190
-
Cys
GCA
[ENA]
¡û
>W2012131696
VSRI01000002
Betaproteobacteria
Cupriavidus gilardii W2-2 [VSRI]
721663
721736
+
Cys
GCA
[ENA]
¡û
>W2012197449
VWRN01000023
Betaproteobacteria
Cupriavidus sp. MKL-01 [VWRN]
150846
150773
-
Cys
GCA
[ENA]
¡û
>W2012218166
VZOV01000039
Betaproteobacteria
Cupriavidus gilardii CCUG 38401 [VZOV]
7463
7390
-
Cys
GCA
[ENA]
¡û
>W2110534926
JAGFTW010000030
Betaproteobacteria
Cupriavidus gilardii Marseille CSURQ4897 [JAGFTW]
2750
2677
-
Cys
GCA
[ENA]
¡û
>W2110684201
JAIMCG010000003
Betaproteobacteria
Cupriavidus sp. AU9028 [JAIMCG]
178598
178525
-
Cys
GCA
[ENA]
¡û
>C211256752
CP069162
Betaproteobacteria
Paludibacterium yongneupense BCRC 80531 [CP069162]
3459238
3459165
-
Cys
GCA
-
¡û
>C211256822
CP069163
Betaproteobacteria
Paludibacterium sp. B53371 [CP069163]
2393933
2393860
-
Cys
GCA
-
¡û
>W2110711743
JAIZPL010000003
Betaproteobacteria
Cupriavidus sp. DB3 [JAIZPL]
732630
732703
+
Cys
GCA
[ENA]
¡û
>C231165663
CP080293
Betaproteobacteria
Cupriavidus cauae PHS1 [CP080293, CP080294]
3132861
3132788
-
Cys
GCA
-
¡û
>C231490533
CP104386
Betaproteobacteria
Cupriavidus gilardii WM02 [CP104386, CP104387]
1303012
1303085
+
Cys
GCA
-
¡û
>C241167952
CP054626
Betaproteobacteria
Cupriavidus gilardii FDAARGOS_639 [CP054624, CP054626]
2117225
2117152
-
Cys
GCA
-
¡û
>WENV046026
AACY022565909
Marine microbial communities from Global Ocean Sampling (GOS)
257
184
-
Cys
GCA
[ENA]
>W1610662580
LJTT01000004
Betaproteobacteria
Betaproteobacteria bacterium SG8_41 [LJTT]
66721
66794
+
Cys
GCA
[ENA]
¡û
>W1610978217
LVXY01000005
Betaproteobacteria
Cupriavidus gilardii [LVXY]
286960
287033
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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