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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.875984 (29 seq.)
>W1710785353
LJHU01000017
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
8407
8334
-
Gly
CCC
[ENA]
¡û
>W1710863851
LMFL01000020
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
38858
38785
-
Gly
CCC
[ENA]
¡û
>W1710863878
LMFL01000044
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
15896
15823
-
Gly
CCC
[ENA]
¡û
>W1710863879
LMFL01000044
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
15732
15659
-
Gly
CCC
[ENA]
¡û
>W1710865534
LMGT01000002
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
16859
16932
+
Gly
CCC
[ENA]
¡û
>C171094885
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
671491
671418
-
Gly
CCC
-
¡û
>WENV180018765
FTAI01001103
[FTAI] metagenome; soil
143
216
+
Gly
CCC
[ENA]
¡û
>WENV180024670
FTII01168143
[FTII] metagenome; soil
422
495
+
Gly
CCC
[ENA]
¡û
>WENV180033023
FTKD01066195
[FTKD] metagenome; soil
140
67
-
Gly
CCC
[ENA]
¡û
>WENV170555986
CXWL01003700
[CXWL] groundwater metagenome; biofilm material
97522
97595
+
Gly
CCC
[ENA]
¡û
>WENV170650296
JRYD01051418
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
662
589
-
Gly
CCC
[ENA]
¡û
>WENV170712533
LNFM01014538
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
14757
14830
+
Gly
CCC
[ENA]
¡û
>WENV170713807
LNFM01042561
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
739
812
+
Gly
CCC
[ENA]
¡û
>WENV170714190
LNFM01059662
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2213
2286
+
Gly
CCC
[ENA]
¡û
>W141731208
JNIX01000007
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
6509
6582
+
Gly
CCC
[ENA]
¡û
>W2010712852
JACHOR010000005
Alphaproteobacteria
Brevundimonas variabilis DSM 4737 [JACHOR]
301037
300966
-
Gly
CCC
[ENA]
¡û
>C211121482
CP059297
Alphaproteobacteria
Brevundimonas sp. AJA228-03 [CP059297]
152724
152797
+
Gly
CCC
-
¡û
>W10109835
ADBM01000001
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
411607
411534
-
Gly
CCC
[ENA]
¡û
>C231560151
CP114542
Alphaproteobacteria
Brevundimonas subvibrioides Br6 [CP114542]
584022
583949
-
Gly
CCC
-
¡û
>C231566448
CP115464
Alphaproteobacteria
Brevundimonas sp. NIBR10 [CP115464]
1076683
1076610
-
Gly
CCC
-
¡û
>C231566495
CP115465
Alphaproteobacteria
Brevundimonas sp. NIBR11 [CP115465]
47861
47788
-
Gly
CCC
-
¡û
>C10102229
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
683783
683710
-
Gly
CCC
[Ensembl]
¡û
>W2310025945
BSOY01000047
Alphaproteobacteria
Brevundimonas denitrificans NBRC 110107 [BSOY]
8133
8060
-
Gly
CCC
[ENA]
¡û
>W11112272
ADBM01000001
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
411607
411534
-
Gly
CCC
[ENA]
¡û
>W1610649159
LJHU01000017
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
8407
8334
-
Gly
CCC
[ENA]
¡û
>W1610726197
LMFL01000020
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
38858
38785
-
Gly
CCC
[ENA]
¡û
>W1610726224
LMFL01000044
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
15896
15823
-
Gly
CCC
[ENA]
¡û
>W1610726225
LMFL01000044
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
15732
15659
-
Gly
CCC
[ENA]
¡û
>W1610727880
LMGT01000002
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
16859
16932
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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