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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.877317 (90 seq.)
>W131010425
AHYM01000007
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
259887
259817
-
Cys
GCA
[ENA]
¡û
>W131037508
AMFD01000009
Bacillota
Lactococcus garvieae I113 [AMFD]
55337
55267
-
Cys
GCA
[ENA]
¡û
>W131037552
AMFE01000017
Bacillota
Lactococcus garvieae Tac2 [AMFE]
55153
55083
-
Cys
GCA
[ENA]
¡û
>W131044484
AMQS01000003
Bacillota
Lactococcus garvieae DCC43 [AMQS]
61424
61494
+
Cys
GCA
[ENA]
¡û
>W1711006242
LQOE01000074
Bacillota
Lactococcus sp. DD01 [LQOE]
57928
57858
-
Cys
GCA
[ENA]
¡û
>W1711228303
LXWL01000001
Bacillota
Lactococcus garvieae [LXWL]
305364
305434
+
Cys
GCA
[ENA]
¡û
>W131202462
ASWT01000006
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
1267646
1267576
-
Cys
GCA
[ENA]
¡û
>W1711744862
MUIZ01000003
Bacillota
Lactococcus petauri 159469 [MUIZ]
62780
62710
-
Cys
GCA
[ENA]
¡û
>W1711942767
NBBK01000006
Bacillota
Lactococcus garvieae [NBBK]
79989
79919
-
Cys
GCA
[ENA]
¡û
>WENV180182207
OAWO01001744
[OAWO] human gut metagenome; faeces
158
88
-
Cys
GCA
[ENA]
¡û
>WENV180454973
OBXO01000209
[OBXO] human gut metagenome; faeces
44603
44673
+
Cys
GCA
[ENA]
¡û
>W141096195
AVFE01000008
Bacillota
Lactococcus garvieae TRF1 [AVFE]
40228
40158
-
Cys
GCA
[ENA]
¡û
>WENV182517937
OIWP01000028
[OIWP] human gut metagenome; faeces
146216
146286
+
Cys
GCA
[ENA]
¡û
>WENV183276707
OLRZ01020400
[OLRZ] human gut metagenome; faeces
1497
1567
+
Cys
GCA
[ENA]
¡û
>WENV183511305
OMJG01000019
[OMJG] food metagenome; Cotija cheese
36532
36462
-
Cys
GCA
[ENA]
¡û
>WENV170547738
CXTS01000033
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
244
174
-
Cys
GCA
[ENA]
¡û
>WENV170548331
CXUD01001615
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
168
98
-
Cys
GCA
[ENA]
¡û
>WENV170549729
CXVH01001487
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
140
70
-
Cys
GCA
[ENA]
¡û
>WENV170549770
CXVI01000126
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
72
142
+
Cys
GCA
[ENA]
¡û
>C181001741
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
900912
900842
-
Cys
GCA
-
¡û
>C191044512
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
298594
298664
+
Cys
GCA
-
¡û
>W1910641557
LTDA01000011
Bacillota
Lactococcus garvieae KS1546 [LTDA]
310569
310639
+
Cys
GCA
[ENA]
¡û
>W1810907543
QVHV01000001
Bacillota
Lactococcus petauri AM13-9 [QVHV]
137546
137476
-
Cys
GCA
[ENA]
¡û
>W2010145322
BLXU01000007
Bacillota
Lactococcus garvieae lg38 [BLXU]
115860
115790
-
Cys
GCA
[ENA]
¡û
>W2010259160
CABJEF020000001
Bacillota
Lactococcus garvieae [CABJEF]
137546
137476
-
Cys
GCA
[ENA]
¡û
>W2010632755
JABTTD010000001
Bacillota
Lactococcus petauri LZys1 [JABTTD]
259427
259357
-
Cys
GCA
[ENA]
¡û
>W2010786183
LTDA01000011
Bacillota
Lactococcus garvieae KS1546 [LTDA]
310569
310639
+
Cys
GCA
[ENA]
¡û
>W2011490925
RSFD01000030
Bacillota
Lactococcus garvieae RTCLI04 [RSFD]
64387
64457
+
Cys
GCA
[ENA]
¡û
>W2011543963
SDHG01000005
Bacillota
Lactococcus petauri DB43829 [SDHG]
69481
69551
+
Cys
GCA
[ENA]
¡û
>W2011544020
SDHH01000007
Bacillota
Lactococcus garvieae TILSE6 [SDHH]
77524
77454
-
Cys
GCA
[ENA]
¡û
>W2011544045
SDHI01000001
Bacillota
Lactococcus petauri DB22928 [SDHI]
290204
290274
+
Cys
GCA
[ENA]
¡û
>W2011544092
SDHJ01000001
Bacillota
Lactococcus garvieae DB24910 [SDHJ]
296312
296382
+
Cys
GCA
[ENA]
¡û
>W2011544142
SDHK01000001
Bacillota
Lactococcus petauri DB44798 [SDHK]
294057
294127
+
Cys
GCA
[ENA]
¡û
>W2011544204
SDHL01000001
Bacillota
Lactococcus petauri FISH1 [SDHL]
340635
340565
-
Cys
GCA
[ENA]
¡û
>W2011544243
SDHM01000001
Bacillota
Lactococcus petauri GRT2 [SDHM]
311022
311092
+
Cys
GCA
[ENA]
¡û
>W2011544296
SDHN01000001
Bacillota
Lactococcus garvieae CT2 [SDHN]
65876
65806
-
Cys
GCA
[ENA]
¡û
>W2011544335
SDHO01000001
Bacillota
Lactococcus garvieae FISHB [SDHO]
85087
85157
+
Cys
GCA
[ENA]
¡û
>W2011544394
SDHP01000002
Bacillota
Lactococcus garvieae TILSE2 [SDHP]
304902
304972
+
Cys
GCA
[ENA]
¡û
>W2011544445
SDHQ01000005
Bacillota
Lactococcus garvieae DM12426 [SDHQ]
71678
71748
+
Cys
GCA
[ENA]
¡û
>W2011602721
SIVY01000027
Bacillota
Lactococcus petauri LG_SAV_20 [SIVY]
231145
231075
-
Cys
GCA
[ENA]
¡û
>W2011602738
SIVY01000039
Bacillota
Lactococcus petauri LG_SAV_20 [SIVY]
2470
2540
+
Cys
GCA
[ENA]
¡û
>W2110068658
BOVO01000004
Bacillota
Lactococcus garvieae subsp. bovis LMG 30663 [BOVO]
35459
35529
+
Cys
GCA
[ENA]
¡û
>W2110068705
BOVP01000001
Bacillota
Lactococcus formosensis NBRC 109475 [BOVP]
397303
397233
-
Cys
GCA
[ENA]
¡û
>W2110344949
JADMXE010000001
Bacillota
Lactococcus garvieae 1001287H_170206_H11 [JADMXE]
322493
322563
+
Cys
GCA
[ENA]
¡û
>W2110368976
JADPGL010000001
Bacillota
Lactococcus petauri 1001095IJ_161003_C7 [JADPGL]
25744
25814
+
Cys
GCA
[ENA]
¡û
>W2110369578
JADPHA010000001
Bacillota
Lactococcus petauri 1001713B170214_170313_F10 [JADPHA]
310723
310793
+
Cys
GCA
[ENA]
¡û
>W2110437306
JAEOAS010000001
Bacillota
Lactococcus petauri H10 [JAEOAS]
112721
112791
+
Cys
GCA
[ENA]
¡û
>W2110583766
JAGYXD010000001
Bacillota
Lactococcus garvieae INF126 [JAGYXD]
14565
14635
+
Cys
GCA
[ENA]
¡û
>W2110583828
JAGYXE010000002
Bacillota
Lactococcus petauri INF110 [JAGYXE]
132404
132334
-
Cys
GCA
[ENA]
¡û
>C211212707
CP065691
Bacillota
Lactococcus garvieae FDAARGOS_893 [CP065691]
2063082
2063152
+
Cys
GCA
-
¡û
>C211219747
CP066003
Bacillota
Lactococcus garvieae FDAARGOS_1002 [CP066003]
704488
704418
-
Cys
GCA
-
¡û
>C211221956
CP066074
Bacillota
Lactococcus garvieae FDAARGOS_1062 [CP066074]
289783
289853
+
Cys
GCA
-
¡û
>C211222324
CP066087
Bacillota
Lactococcus garvieae FDAARGOS_1063 [CP066087]
762194
762124
-
Cys
GCA
-
¡û
>C211289021
CP071285
Bacillota
Lactococcus garvieae LG728 [CP071285]
288441
288511
+
Cys
GCA
-
¡û
>C211289079
CP071290
Bacillota
Lactococcus garvieae LG791 [CP071290]
298570
298640
+
Cys
GCA
-
¡û
>C211289137
CP071293
Bacillota
Lactococcus sp. LG1074 [CP071293]
292824
292894
+
Cys
GCA
-
¡û
>C211289197
CP071295
Bacillota
Lactococcus sp. LG1267 [CP071295]
760773
760843
+
Cys
GCA
-
¡û
>C211289255
CP071300
Bacillota
Lactococcus sp. LG592 [CP071300]
289251
289321
+
Cys
GCA
-
¡û
>C211289319
CP071301
Bacillota
Lactococcus sp. LG606 [CP071301]
2035741
2035811
+
Cys
GCA
-
¡û
>C211408093
CP084377
Bacillota
Lactococcus garvieae Lg-Granada [CP084377]
1284258
1284188
-
Cys
GCA
-
¡û
>C231024824
AP026069
Bacillota
Lactococcus garvieae MS210922A [AP026069]
289048
289118
+
Cys
GCA
-
¡û
>C231034122
CP028386
Bacillota
Lactococcus garvieae IBB3403 [CP028386]
324135
324205
+
Cys
GCA
-
¡û
>W1510060226
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
878257
878187
-
Cys
GCA
[ENA]
¡û
>W1510060343
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
878257
878187
-
Cys
GCA
[ENA]
¡û
>C231227669
CP086394
Bacillota
Lactococcus garvieae subsp. garvieae B18 [CP086394]
322792
322862
+
Cys
GCA
-
¡û
>C231227729
CP086395
Bacillota
Lactococcus formosensis I4/6O [CP086395]
293034
293104
+
Cys
GCA
-
¡û
>C231227787
CP086401
Bacillota
Lactococcus petauri LG4 [CP086401]
326615
326685
+
Cys
GCA
-
¡û
>C231230506
CP086595
Bacillota
Lactococcus petauri LG26 [CP086595]
329921
329991
+
Cys
GCA
-
¡û
>C231353061
CP094882
Bacillota
Lactococcus petauri B1726 [CP094882]
304210
304280
+
Cys
GCA
-
¡û
>W2110761222
QSNN01000007
Bacillota
Lactococcus petauri RJAA.1 [QSNN]
256761
256831
+
Cys
GCA
[ENA]
¡û
>C231519380
CP109635
Bacillota
Lactococcus garvieae Alexii-11_2 [CP109635]
330288
330358
+
Cys
GCA
-
¡û
>C231519432
CP109636
Bacillota
Lactococcus garvieae Alexii-6_2 [CP109636]
329589
329659
+
Cys
GCA
-
¡û
>C231553149
CP113924
Bacillota
Streptococcaceae bacterium ESL0729 [CP113924]
1400915
1400985
+
Cys
GCA
-
¡û
>C231627982
CP120417
Bacillota
Lactococcus sp. bn62 [CP120417]
420466
420536
+
Cys
GCA
-
¡û
>W2110783077
WIVG01000035
Bacillota
Lactococcus garvieae EP01 [WIVG]
21262
21332
+
Cys
GCA
[ENA]
¡û
>C241103661
CP045924
Bacillota
Lactococcus petauri CF11 [CP045924]
292829
292899
+
Cys
GCA
-
¡û
>C241278482
CP127854
Bacillota
Lactococcus petauri GB97 [CP127854]
322888
322958
+
Cys
GCA
-
¡û
>C242000017
AP027275
Bacillota
Lactococcus formosensis MS200408A [AP027275]
311644
311714
+
Cys
GCA
-
¡û
>C11112682
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
298527
298597
+
Cys
GCA
[Ensembl]
¡û
>C11112742
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
298584
298654
+
Cys
GCA
[Ensembl]
¡û
>W1511314668
JPUJ01000003
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
112855
112925
+
Cys
GCA
[ENA]
¡û
>W11157431
AFCC01000002
Bacillota
Lactococcus garvieae 21881 [AFCC]
8690
8620
-
Cys
GCA
[ENA]
¡û
>W11157514
AFCD01000056
Bacillota
Lactococcus garvieae 8831 [AFCD]
28341
28411
+
Cys
GCA
[ENA]
¡û
>W11162779
AFHF01000021
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
9688
9618
-
Cys
GCA
[ENA]
¡û
>W121016370
AGQX01000087
Bacillota
Lactococcus garvieae TB25 [AGQX]
31624
31554
-
Cys
GCA
[ENA]
¡û
>W121016395
AGQY01000024
Bacillota
Lactococcus garvieae LG9 [AGQY]
105
35
-
Cys
GCA
[ENA]
¡û
>W121081202
AKFO01000008
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
289858
289928
+
Cys
GCA
[ENA]
¡û
>W1610856892
LQOE01000074
Bacillota
Lactococcus sp. DD01 [LQOE]
57928
57858
-
Cys
GCA
[ENA]
¡û
>W1611012220
LXWL01000001
Bacillota
Lactococcus garvieae [LXWL]
305364
305434
+
Cys
GCA
[ENA]
¡û
>W1710568195
FOTJ01000013
Bacillota
Lactococcus garvieae [FOTJ]
30911
30841
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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