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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.877862 (25 seq.)
>W1711147751
LVJW01000006
Gammaproteobacteria
Candidatus Thiodiazotropha endoloripes Loripes lucinalis [LVJW]
664131
664058
-
Gly
TCC
[ENA]
¡û
>W1711147766
LVJX01000004
Gammaproteobacteria
Candidatus Thiodiazotropha endoloripes Loripes lucinalis [LVJX]
951667
951740
+
Gly
TCC
[ENA]
¡û
>W1711147805
LVJY01000003
Gammaproteobacteria
Candidatus Thiodiazotropha endoloripes Loripes lucinalis [LVJY]
716484
716557
+
Gly
TCC
[ENA]
¡û
>W1711147884
LVJZ01000003
Gammaproteobacteria
Candidatus Thiodiazotropha endoloripes Loripes lucinalis [LVJZ]
341832
341759
-
Gly
TCC
[ENA]
¡û
>W1711147910
LVKA01000011
Gammaproteobacteria
Candidatus Thiodiazotropha endoloripes Loripes lucinalis [LVKA]
465506
465579
+
Gly
TCC
[ENA]
¡û
>W131220215
ATZE01000018
Gammaproteobacteria
Sedimenticola selenatireducens DSM 17993 [ATZE]
137288
137361
+
Gly
TCC
[ENA]
¡û
>W1711309695
MARB01000006
Gammaproteobacteria
Candidatus Thiodiazotropha endolucinida [MARB]
49721
49794
+
Gly
TCC
[ENA]
¡û
>W1711414147
MGZB01000025
Gammaproteobacteria
Gammaproteobacteria bacterium RIFOXYD12_FULL_61_37 [MGZB]
346
273
-
Gly
TCC
[ENA]
¡û
>WENV180044079
LQAJ01002048
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
119
192
+
Gly
TCC
[ENA]
¡û
>WENV180044402
MOXG01000027
[MOXG] mollusc metagenome; Phylotype C (NB3); bacterial symbionts from gill
33976
34049
+
Gly
TCC
[ENA]
¡û
>WENV180242169
OBDI01112441
[OBDI] metagenome; diffuse fluid
123
50
-
Gly
TCC
[ENA]
¡û
>WENV180298109
OBJA01171761
[OBJA] soil metagenome; sediment, water from around vicinity
352
279
-
Gly
TCC
[ENA]
¡û
>WENV180380820
OBOR01023301
[OBOR] marine metagenome; ENVO 00002227
351
278
-
Gly
TCC
[ENA]
¡û
>WENV183513548
OMKS01005847
[OMKS] sediment metagenome; hot spring sediment
8346
8419
+
Gly
TCC
[ENA]
¡û
>WENV170013161
ATLU01000116
[ATLU] bioreactor metagenome; continuous culture bioreactor inoculated with sediment procaryotes from the German
268
195
-
Gly
TCC
[ENA]
¡û
>WENV170693373
LGVC01005265
[LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive
153
80
-
Gly
TCC
[ENA]
¡û
>WENV170696510
LGVF01023293
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
2718
2645
-
Gly
TCC
[ENA]
¡û
>C191004472
AP018725
Gammaproteobacteria
Sulfuriflexus mobilis aks1 [AP018725]
2420860
2420787
-
Gly
TCC
-
¡û
>C151082442
CP011412
Gammaproteobacteria
Sedimenticola thiotaurini SIP-G1 [CP011412]
3134893
3134966
+
Gly
TCC
[Ensembl]
¡û
>W2010574326
JAAVSH020000001
Gammaproteobacteria
endosymbiont of Lamellibrachia barhami [JAAVSH]
2868276
2868203
-
Gly
TCC
[ENA]
¡û
>W2011633791
SMFX01000001
Gammaproteobacteria
Thiogranum longum DSM 19610 [SMFX]
487431
487504
+
Gly
TCC
[ENA]
¡û
>W2012092638
VMNH01000005
Gammaproteobacteria
Sedimenticola selenatireducens BK-1 [VMNH]
376
303
-
Gly
TCC
[ENA]
¡û
>C201051410
CP032508
Gammaproteobacteria
gamma proteobacterium SS-5 [CP032508]
221633
221560
-
Gly
TCC
-
¡û
>C211094147
CP053680
Gammaproteobacteria
Gammaproteobacteria bacterium (ex Lamellibrachia satsuma) [CP053680]
1779661
1779588
-
Gly
TCC
-
¡û
>C241285818
CP128988
Gammaproteobacteria
Thiohalobacter sp. IOR34 [CP128988]
2418487
2418414
-
Gly
TCC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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