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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.877881 (17 seq.)
>W1711169199
LVYV01000045
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
55472
55545
+
Cys
GCA
[ENA]
¡û
>WENV180032075
FTJU01059199
[FTJU] metagenome; soil
91
163
+
Cys
GCA
[ENA]
¡û
>W1910548953
FZOX01000002
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
745951
745878
-
Cys
GCA
[ENA]
¡û
>W1810576952
QENW01000005
Alphaproteobacteria
Tardiphaga sp. OV697 [QENW]
79806
79879
+
Cys
GCA
[ENA]
¡û
>W1810784367
QRAQ01000001
Alphaproteobacteria
Tardiphaga sp. CF115 [QRAQ]
422959
422886
-
Cys
GCA
[ENA]
¡û
>W2010430714
FZOX01000002
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
745951
745878
-
Cys
GCA
[ENA]
¡û
>W2010607375
JABMCJ010000093
Alphaproteobacteria
Tardiphaga robiniae LMG 26467 [JABMCJ]
227683
227610
-
Cys
GCA
[ENA]
¡û
>W2011025805
NPKQ01000007
Alphaproteobacteria
Tardiphaga sp. P9-11 [NPKQ]
220742
220669
-
Cys
GCA
[ENA]
¡û
>W2011354784
RAPX01000009
Alphaproteobacteria
Tardiphaga sp. YR296 [RAPX]
269291
269218
-
Cys
GCA
[ENA]
¡û
>C211082818
CP050292
Alphaproteobacteria
Tardiphaga robiniae 581 [CP050292]
1725114
1725187
+
Cys
GCA
-
¡û
>C231044624
CP036537
Alphaproteobacteria
Rhodopseudomonas boonkerdii NS23 [CP036537]
3024338
3024265
-
Cys
GCA
-
¡û
>C231248622
CP088008
Alphaproteobacteria
Tardiphaga sp. 37S4 [CP088008]
2393746
2393673
-
Cys
GCA
-
¡û
>C241324906
CP135529
Alphaproteobacteria
Tardiphaga sp. 709 [CP135529]
335641
335714
+
Cys
GCA
-
¡û
>C241346196
CP139027
Alphaproteobacteria
Tardiphaga sp. 42S5 [CP139027]
4057803
4057876
+
Cys
GCA
-
¡û
>W1610978994
LVYV01000045
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
55472
55545
+
Cys
GCA
[ENA]
¡û
>W1710540675
FNWZ01000003
Alphaproteobacteria
Tardiphaga sp. OK245 [FNWZ]
459486
459413
-
Cys
GCA
[ENA]
¡û
>W1710568424
FOTP01000002
Alphaproteobacteria
Bradyrhizobium sp. NFR13 [FOTP]
428906
428833
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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