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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87866 (12 seq.)
>W1711136337
LVAC01000012
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
118629
118716
+
Ser
GGA
[ENA]
¡û
>C171118637
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
27003
26916
-
Ser
GGA
-
¡û
>WENV170658035
JTFP01047762
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
600
687
+
Ser
GGA
[ENA]
¢þ
>C181078362
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
18603
18516
-
Ser
GGA
-
¡û
>W09110085
ABUV01000001
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
726699
726786
+
Ser
GGA
[ENA]
¡û
>W141814450
JQGK01000013
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
38592
38679
+
Ser
GGA
[ENA]
¡û
>W1510014735
BBQE01000007
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
114442
114355
-
Ser
GGA
[ENA]
¡û
>C10111348
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
14867
14780
-
Ser
GGA
[Ensembl]
¡û
>W1511365466
JSEC01000003
Campylobacterota
Sulfurospirillum sp. MES [JSEC]
294350
294263
-
Ser
GGA
[ENA]
¡û
>C121011194
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
18355
18268
-
Ser
GGA
[Ensembl]
¡û
>C161001396
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
261696
261783
+
Ser
GGA
-
¡û
>W1610947457
LVAC01000012
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
118629
118716
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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