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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.878738 (46 seq.)
>W1710860257
LMCT01000001
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
444302
444231
-
Gln
TTG
[ENA]
¡û
>W1710866970
LMHX01000023
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
319537
319608
+
Gln
TTG
[ENA]
¡û
>W1711183418
LWLA01000014
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
13937
13866
-
Gln
TTG
[ENA]
¡û
>W1711627076
MPLE01000004
Actinomycetota
Streptomyces viridifaciens [MPLE]
2947445
2947374
-
Gln
TTG
[ENA]
¡û
>C171109538
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
2008356
2008285
-
Gln
TTG
-
¡û
>WENV180023380
FTHV01003414
[FTHV] metagenome; soil
124
195
+
Gln
TTG
[ENA]
¡û
>WENV180023510
FTHY01004319
[FTHY] metagenome; soil
124
195
+
Gln
TTG
[ENA]
¡û
>WENV180033278
FTKF01239361
[FTKF] metagenome; soil
92
21
-
Gln
TTG
[ENA]
¡û
>WENV180033689
FTKL01010051
[FTKL] metagenome; soil
749
820
+
Gln
TTG
[ENA]
¡û
>W141282703
JAIY01000006
Actinomycetota
Kitasatospora sp. MBT66 [JAIY]
1534151
1534078
-
Gln
TTG
[ENA]
¡û
>W141755618
JNWR01000005
Actinomycetota
Kitasatospora aureofaciens [JNWR]
237254
237325
+
Gln
TTG
[ENA]
¡û
>W141757002
JNXO01000246
Actinomycetota
Kitasatospora misakiensis [JNXO]
789
716
-
Gln
TTG
[ENA]
¡û
>W141760869
JOAI01000021
Actinomycetota
Streptomyces sp. NRRL B-24484 [JOAI]
64184
64255
+
Gln
TTG
[ENA]
¡û
>W141761917
JOBB01000340
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
388
461
+
Gln
TTG
[ENA]
¡û
>W141763723
JOCF01000059
Actinomycetota
Streptomyces sp. NRRL WC-3742 [JOCF]
9103
9174
+
Gln
TTG
[ENA]
¡û
>W141764994
JODB01002237
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
392
465
+
Gln
TTG
[ENA]
¡û
>W141766051
JODS01000042
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JODS]
52220
52147
-
Gln
TTG
[ENA]
¡û
>W141767522
JOER01000013
Actinomycetota
Kitasatospora aureofaciens [JOER]
36541
36470
-
Gln
TTG
[ENA]
¡û
>W141768723
JOFK01000004
Actinomycetota
Kitasatospora aureofaciens avellaneus [JOFK]
109022
109093
+
Gln
TTG
[ENA]
¡û
>W141770055
JOGF01003512
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
418
491
+
Gln
TTG
[ENA]
¡û
>W141770130
JOGG01000075
Actinomycetota
Streptomyces sp. NRRL B-5680 [JOGG]
14830
14759
-
Gln
TTG
[ENA]
¡û
>W141771940
JOHN01000003
Actinomycetota
Streptomyces sp. NRRL F-6131 [JOHN]
191860
191933
+
Gln
TTG
[ENA]
¡û
>W1911243772
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
3229819
3229748
-
Gln
TTG
[ENA]
¡û
>W1810121554
PHUK01000001
Actinomycetota
Kitasatospora sp. OK780 [PHUK]
3380859
3380788
-
Gln
TTG
[ENA]
¡û
>W2010705674
JACHJR010000001
Actinomycetota
Kitasatospora gansuensis DSM 44786 [JACHJR]
3205208
3205137
-
Gln
TTG
[ENA]
¡û
>W2011069131
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
3229819
3229748
-
Gln
TTG
[ENA]
¡û
>W2012047341
VIVR01000001
Actinomycetota
Kitasatospora atroaurantiaca DSM 41649 [VIVR]
4592932
4593003
+
Gln
TTG
[ENA]
¡û
>W2012230646
WBOF01000001
Actinomycetota
Streptomyces kaniharaensis SF-557 [WBOF]
3499386
3499457
+
Gln
TTG
[ENA]
¡û
>W2110042527
BMUB01000008
Actinomycetota
Kitasatospora psammotica JCM 4434 [BMUB]
311201
311272
+
Gln
TTG
[ENA]
¡û
>W2110053244
BNBO01000008
Actinomycetota
Streptomyces indigoferus JCM 4646 [BNBO]
93526
93597
+
Gln
TTG
[ENA]
¡û
>C201037054
CP023698
Actinomycetota
Streptomyces viridifaciens ATCC 11989 [CP023698]
3136756
3136685
-
Gln
TTG
-
¡û
>W2110748591
MECK01000110
Actinomycetota
Streptomyces sp. CBMA123 [MECK]
14911
14840
-
Gln
TTG
[ENA]
¡û
>C231284977
CP090841
Actinomycetota
Streptomyces viridifaciens DSM 40239 [CP090841]
3023014
3022943
-
Gln
TTG
-
¡û
>C241209723
CP108460
Actinomycetota
Kitasatospora herbaricolor NBC_01265 [CP108460]
5382804
5382875
+
Gln
TTG
-
¡û
>C241210225
CP108482
Actinomycetota
Kitasatospora herbaricolor NBC_01247 [CP108482]
4289465
4289394
-
Gln
TTG
-
¡û
>C241211688
CP108561
Actinomycetota
Kitasatospora purpeofusca NBC_01203 [CP108561]
5705946
5706019
+
Gln
TTG
-
¡û
>C241211758
CP108562
Actinomycetota
Kitasatospora purpeofusca NBC_01202 [CP108562]
5762740
5762813
+
Gln
TTG
-
¡û
>W1511311648
JPRF01000390
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
5527
5456
-
Gln
TTG
[ENA]
¡û
>W1511529090
JYJF01000104
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
16330
16259
-
Gln
TTG
[ENA]
¡û
>W1511545203
JZKG01000095
Actinomycetota
Streptomyces rubellomurinus subsp. indigoferus ATCC 31304 [JZKG]
17074
17001
-
Gln
TTG
[ENA]
¡û
>W1511545278
JZKH01000113
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
11573
11500
-
Gln
TTG
[ENA]
¡û
>W1511555652
JZWY01000406
Actinomycetota
Streptomyces sp. NRRL S-495 [JZWY]
11813
11740
-
Gln
TTG
[ENA]
¡û
>W1511590469
LBHA01000353
Actinomycetota
Kitasatospora aureofaciens NRRL 2209 [LBHA]
11352
11281
-
Gln
TTG
[ENA]
¡û
>W1511696781
LGDO01000064
Actinomycetota
Streptomyces sp. XY431 [LGDO]
9586
9659
+
Gln
TTG
[ENA]
¡û
>W1610722603
LMCT01000001
Actinomycetota
Kitasatospora sp. Root107 [LMCT]
444302
444231
-
Gln
TTG
[ENA]
¡û
>W1610729316
LMHX01000023
Actinomycetota
Kitasatospora sp. Root187 [LMHX]
319537
319608
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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