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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.87876 (39 seq.)
>W131218325
ATXO01000019
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
2113
2026
-
Leu
GAG
[ENA]
¡û
>C006905
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2884397
2884484
+
Leu
GAG
[Ensembl]
¡û
>WENV180014117
FPIC01058517
[FPIC] soil metagenome; Soil
218
131
-
Leu
GAG
[ENA]
¢þ
>WENV181226053
OFDK01000010
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
103549
103636
+
Leu
GAG
[ENA]
¢þ
>WENV181285425
OFGS01000330
[OFGS] hot springs metagenome; Water and soil
8992
9079
+
Leu
GAG
[ENA]
¢þ
>WENV181408669
OGCH01008091
[OGCH] hot springs metagenome; hot springs
650
737
+
Leu
GAG
[ENA]
¢þ
>C191131131
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
887436
887349
-
Leu
GAG
-
¡û
>W09104535
AALW01000010
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
2310
2397
+
Leu
GAG
[ENA]
¡û
>W09113811
ABYZ01000003
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
330772
330685
-
Leu
GAG
[ENA]
¡û
>C09100832
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
2095292
2095379
+
Leu
GAG
[Ensembl]
¡û
>W1911155335
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
2246882
2246969
+
Leu
GAG
[ENA]
¡û
>W1911244042
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
2222496
2222409
-
Leu
GAG
[ENA]
¡û
>W1911244073
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1801584
1801671
+
Leu
GAG
[ENA]
¡û
>W1911244123
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
2354551
2354638
+
Leu
GAG
[ENA]
¡û
>W1911244200
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
775122
775035
-
Leu
GAG
[ENA]
¡û
>W1911244220
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2264665
2264752
+
Leu
GAG
[ENA]
¡û
>W1911572563
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
685786
685699
-
Leu
GAG
[ENA]
¡û
>W1911572568
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
139540
139627
+
Leu
GAG
[ENA]
¡û
>W1911572658
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
769998
769911
-
Leu
GAG
[ENA]
¡û
>W1810052277
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
242136
242049
-
Leu
GAG
[ENA]
¡û
>W1810071916
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
724119
724032
-
Leu
GAG
[ENA]
¡û
>W1810071953
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1758228
1758141
-
Leu
GAG
[ENA]
¡û
>W1810071969
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
63295
63382
+
Leu
GAG
[ENA]
¡û
>W1810368008
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2850579
2850666
+
Leu
GAG
[ENA]
¡û
>C10103648
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1921321
1921408
+
Leu
GAG
[Ensembl]
¡û
>C11105231
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
839793
839706
-
Leu
GAG
[Ensembl]
¡û
>C11105470
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1690719
1690806
+
Leu
GAG
[Ensembl]
¡û
>C11105854
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1773206
1773293
+
Leu
GAG
[Ensembl]
¡û
>W11139476
AEKD01000029
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
29113
29026
-
Leu
GAG
[ENA]
¡û
>W1511563952
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
2263792
2263879
+
Leu
GAG
[ENA]
¡û
>W1511564060
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1969799
1969886
+
Leu
GAG
[ENA]
¡û
>W1710603764
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1208439
1208352
-
Leu
GAG
[ENA]
¡û
>W1710603806
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
1248842
1248929
+
Leu
GAG
[ENA]
¡û
>W1710603903
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2202150
2202237
+
Leu
GAG
[ENA]
¡û
>W1710605064
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
1260798
1260885
+
Leu
GAG
[ENA]
¡û
>W1710609686
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1127082
1126995
-
Leu
GAG
[ENA]
¡û
>W1710609715
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
2774996
2775083
+
Leu
GAG
[ENA]
¡û
>W1710609754
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
2367229
2367316
+
Leu
GAG
[ENA]
¡û
>W1710609800
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
2359773
2359860
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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