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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.879332 (25 seq.)
>C000095
CP000474
Actinomycetota
Paenarthrobacter aurescens TC1 [CP000474]
417046
416976
-
Cys
GCA
[Ensembl]
¡û
>WENV180016378
FSUT01000280
[FSUT] metagenome; soil
3202
3131
-
Cys
GCA
[ENA]
¡û
>WENV180016388
FSUT01000678
[FSUT] metagenome; soil
3350
3279
-
Cys
GCA
[ENA]
¡û
>WENV180025490
FTIP01020670
[FTIP] metagenome; soil
538
467
-
Cys
GCA
[ENA]
¡û
>W141278882
JAFW01000001
Actinomycetota
Arthrobacter sp. 31Y [JAFW]
2865040
2864967
-
Cys
GCA
[ENA]
¡û
>C181065000
CP022436
Actinomycetota
Arthrobacter sp. YN [CP022436]
456127
456056
-
Cys
GCA
-
¡û
>W2010320652
CACSJJ010000039
Actinomycetota
Arthrobacter sp. 18067 [CACSJJ]
7452
7381
-
Cys
GCA
[ENA]
¡û
>W2011260427
QJQZ01000030
Actinomycetota
Paenarthrobacter nitroguajacolicus xwA8 [QJQZ]
29175
29246
+
Cys
GCA
[ENA]
¡û
>W2011260524
QJRB01000027
Actinomycetota
Paenarthrobacter nitroguajacolicus xwA3 [QJRB]
32159
32230
+
Cys
GCA
[ENA]
¡û
>W2012094651
VNFK01000012
Actinomycetota
Paenarthrobacter nitroguajacolicus SM1928 [VNFK]
86847
86918
+
Cys
GCA
[ENA]
¡û
>W2110552615
JAGINL010000001
Actinomycetota
Pseudarthrobacter sp. PvP004 [JAGINL]
3620158
3620229
+
Cys
GCA
[ENA]
¡û
>C211025079
AP024646
Actinomycetota
Arthrobacter sp. StoSoilB5 [AP024646]
386502
386431
-
Cys
GCA
-
¡û
>C211030290
CP014571
Actinomycetota
Arthrobacter sp. D5-1 [CP014571]
544267
544196
-
Cys
GCA
-
¡û
>W1510018505
BBUD01000445
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
2522
2451
-
Cys
GCA
[ENA]
¡û
>C231193800
CP084560
Actinomycetota
Arthrobacter sp. FW306-2-2C-D06B [CP084560]
295500
295429
-
Cys
GCA
-
¡û
>C231461993
CP102950
Actinomycetota
Arthrobacter sp. CJ23 [CP102950]
405485
405414
-
Cys
GCA
-
¡û
>C241248443
CP123579
Actinomycetota
Paenarthrobacter sp. OM7 [CP123579]
485070
484999
-
Cys
GCA
-
¡û
>W1510641763
CVLG01000001
Actinomycetota
Paenarthrobacter nitroguajacolicus HG [CVLG]
756687
756616
-
Cys
GCA
[ENA]
¡û
>C161001315
AP014719
Actinomycetota
Arthrobacter sp. Hiyo8 [AP014719]
2182974
2183045
+
Cys
GCA
-
¡û
>W121086811
AKKK01000020
Actinomycetota
Arthrobacter sp. M2012083 [AKKK]
7712
7641
-
Cys
GCA
[ENA]
¡û
>W1610050331
BBFS01000128
Actinomycetota
Paenarthrobacter nitroguajacolicus JCM 14115 [BBFS]
8622
8551
-
Cys
GCA
[ENA]
¡û
>C131002343
CP003203
Actinomycetota
Arthrobacter sp. Rue61a [CP003203]
394981
394910
-
Cys
GCA
[Ensembl]
¡û
>W1710046730
BBFS01000128
Actinomycetota
Paenarthrobacter nitroguajacolicus JCM 14115 [BBFS]
8622
8551
-
Cys
GCA
[ENA]
¡û
>W1710529032
FNNR01000013
Actinomycetota
Arthrobacter sp. cf158 [FNNR]
4124
4051
-
Cys
GCA
[ENA]
¡û
>W1710541447
FNYI01000006
Actinomycetota
Arthrobacter sp. yr096 [FNYI]
53198
53271
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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