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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.880399 (11 seq.)
>WENV170288580
CERX01105996
[CERX] marine metagenome genome assembly TARA_068_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1143
1070
-
Cys
GCA
[ENA]
¡û
>C181186005
CP029843
Gammaproteobacteria
Lysobacter maris HZ9B [CP029843]
2130058
2129985
-
Cys
GCA
-
¡û
>C181186007
CP029843
Gammaproteobacteria
Lysobacter maris HZ9B [CP029843]
2129643
2129570
-
Cys
GCA
-
¡û
>C191189096
CP041242
Gammaproteobacteria
Lysobacter alkalisoli SJ-36 [CP041242]
2045627
2045554
-
Cys
GCA
-
¡û
>W2010713360
JACHTE010000008
Gammaproteobacteria
Lysobacter sp. SG-8 [JACHTE]
85871
85944
+
Cys
GCA
[ENA]
¡û
>W2010713374
JACHTF010000002
Gammaproteobacteria
Lysobacter spongiae 119BY6-57 [JACHTF]
176045
175972
-
Cys
GCA
[ENA]
¡û
>W2012036948
VICD02000218
Gammaproteobacteria
Lysobacter maris KCTC 42381 [VICD]
4452
4379
-
Cys
GCA
[ENA]
¡û
>W2012036950
VICD02000218
Gammaproteobacteria
Lysobacter maris KCTC 42381 [VICD]
4046
3973
-
Cys
GCA
[ENA]
¡û
>W2012036979
VICE01000058
Gammaproteobacteria
Lysobacter aestuarii JCM 31130 [VICE]
17680
17753
+
Cys
GCA
[ENA]
¡û
>C231163053
CP079801
Gammaproteobacteria
Halopseudomonas sp. RR6 [CP079801]
3918299
3918226
-
Cys
GCA
-
¡û
>C241138029
CP049864
Gammaproteobacteria
Lysobacter sp. HDW10 [CP049864]
2040013
2039940
-
Cys
GCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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