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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88082 (15 seq.)
>WENV180747623
ODHN01012244
[ODHN] human metagenome; G_DNA_Stool
946
858
-
Ser
TGA
[ENA]
¡û
>WENV181481081
OGFI01000230
[OGFI] metagenome; Human gut stool
19227
19315
+
Ser
TGA
[ENA]
¡û
>WENV181897459
OGXT01000226
[OGXT] human gut metagenome; faeces
44421
44333
-
Ser
TGA
[ENA]
¡û
>WENV181991079
OHAQ01000261
[OHAQ] human gut metagenome; faeces
2185
2273
+
Ser
TGA
[ENA]
¡û
>WENV182320785
OHYI01034560
[OHYI] human gut metagenome; feces
357
269
-
Ser
TGA
[ENA]
¡û
>WENV182684142
OJNX01041161
[OJNX] human gut metagenome; human gut
83
171
+
Ser
TGA
[ENA]
¡û
>WENV182700390
OJOO01037447
[OJOO] human gut metagenome; human gut
869
781
-
Ser
TGA
[ENA]
¡û
>WENV183123048
OLNW01000221
[OLNW] human gut metagenome; faeces
43830
43742
-
Ser
TGA
[ENA]
¡û
>WENV183151622
OLOQ01000378
[OLOQ] human gut metagenome; faeces
29018
29106
+
Ser
TGA
[ENA]
¡û
>WENV183159124
OLOU01000920
[OLOU] human gut metagenome; faeces
10414
10502
+
Ser
TGA
[ENA]
¡û
>WENV183164604
OLOX01000501
[OLOX] human gut metagenome; faeces
22478
22566
+
Ser
TGA
[ENA]
¡û
>WENV183199835
OLPW01000257
[OLPW] human gut metagenome; faeces
36271
36183
-
Ser
TGA
[ENA]
¡û
>WENV183277227
OLSA01000228
[OLSA] human gut metagenome; faeces
9366
9454
+
Ser
TGA
[ENA]
¡û
>WENV183541280
OOAK01010043
[OOAK] human gut metagenome; human gut
1832
1920
+
Ser
TGA
[ENA]
¡û
>WENV170108469
CECA01030638
[CECA] gut metagenome; human stools
229
141
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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