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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88167 (14 seq.)
>C171039001
CP015455
Thermodesulfobacteriota
Syntrophotalea acetylenica DSM 3246 [CP015455]
3034948
3034861
-
Ser
CGA
-
¡û
>C171039160
CP015519
Thermodesulfobacteriota
Syntrophotalea acetylenivorans SFB93 [CP015519]
2563502
2563589
+
Ser
CGA
-
¡û
>C015909
CP000142
Thermodesulfobacteriota
Syntrophotalea carbinolica DSM 2380 [CP000142]
410607
410694
+
Ser
CGA
[Ensembl]
¡û
>WENV180345974
OBLN01016288
[OBLN] sediment metagenome; sediment
1036
949
-
Ser
CGA
[ENA]
¢þ
>WENV180346003
OBLN01018850
[OBLN] sediment metagenome; sediment
88
1
-
Ser
CGA
[ENA]
¢þ
>W141076087
ATBO01000113
Thermodesulfobacteriota
Desulfuromonas sp. TF [ATBO]
13544
13631
+
Ser
CGA
[ENA]
¡û
>WENV170657645
JTFP01006559
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
2967
2880
-
Ser
CGA
[ENA]
¢þ
>WENV170657972
JTFP01038606
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
1180
1093
-
Ser
CGA
[ENA]
¢þ
>W1910230090
FOJJ01000039
Thermodesulfobacteriota
Desulfuromonas acetexigens [FOJJ]
79897
79984
+
Ser
CGA
[ENA]
¡û
>C151066473
CP010311
Thermodesulfobacteriota
Geoalkalibacter subterraneus Red1 [CP010311]
256537
256624
+
Ser
CGA
[Ensembl]
¡û
>W1511480367
JWJD01000001
Thermodesulfobacteriota
Geoalkalibacter ferrihydriticus DSM 17813 [JWJD]
515125
515038
-
Ser
CGA
[ENA]
¡û
>C161082904
CP015080
Thermodesulfobacteriota
Desulfuromonas sp. DDH964 [CP015080]
562119
562206
+
Ser
CGA
[Ensembl]
¡û
>W1710514060
FNAQ01000003
Thermodesulfobacteriota
Desulfuromonas thiophila [FNAQ]
157315
157402
+
Ser
CGA
[ENA]
¡û
>W1710521934
FNGU01000002
Thermodesulfobacteriota
Geoalkalibacter ferrihydriticus [FNGU]
125140
125053
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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