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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88666 (76 seq.)
>W1711047205
LROW01000011
Gammaproteobacteria
Klebsiella pneumoniae [LROW]
221806
221891
+
Ser
TGA
[ENA]
¡û
>W1712054025
NFXM01000055
Gammaproteobacteria
Klebsiella pneumoniae [NFXM]
1120
1035
-
Ser
TGA
[ENA]
¡û
>C171035978
CP015134
Gammaproteobacteria
Klebsiella pneumoniae ATCC 35657 [CP015134]
3503861
3503946
+
Ser
TGA
-
¡û
>WENV181806976
OGSM01002654
[OGSM] human gut metagenome; fecal sample 1 from infant 7
193
108
-
Ser
TGA
[ENA]
¡û
>WENV181900046
OGXV01000922
[OGXV] human gut metagenome; faeces
15651
15736
+
Ser
TGA
[ENA]
¡û
>WENV181950191
OGZG01000560
[OGZG] human gut metagenome; faeces
7687
7602
-
Ser
TGA
[ENA]
¡û
>WENV182026248
OHCK01002267
[OHCK] human gut metagenome; feces
1474
1559
+
Ser
TGA
[ENA]
¡û
>WENV182052502
OHEH01004871
[OHEH] human gut metagenome; feces
1540
1625
+
Ser
TGA
[ENA]
¡û
>WENV182239071
OHSA01002379
[OHSA] human gut metagenome; feces
1590
1675
+
Ser
TGA
[ENA]
¡û
>WENV182400545
OIEQ01000685
[OIEQ] human gut metagenome; human gut
4708
4623
-
Ser
TGA
[ENA]
¡û
>WENV182405741
OIEW01000673
[OIEW] human gut metagenome; fecal sample from infant N3_177 DOL 11
215
130
-
Ser
TGA
[ENA]
¡û
>WENV182410101
OIFK01000059
[OIFK] human gut metagenome; stool
69957
70042
+
Ser
TGA
[ENA]
¡û
>WENV182812412
OJXS01001240
[OJXS] human gut metagenome; human gut
3902
3817
-
Ser
TGA
[ENA]
¡û
>WENV182845180
OKJA01000100
[OKJA] human gut metagenome; human gut
28681
28596
-
Ser
TGA
[ENA]
¡û
>WENV182845466
OKJD01000318
[OKJD] human gut metagenome; human gut
981
896
-
Ser
TGA
[ENA]
¡û
>WENV182849023
OKKN01000063
[OKKN] human gut metagenome; human gut
28684
28599
-
Ser
TGA
[ENA]
¡û
>WENV182862186
OKPK01000105
[OKPK] human gut metagenome; human gut
7010
7095
+
Ser
TGA
[ENA]
¡û
>WENV182862433
OKPM01000292
[OKPM] human gut metagenome; human gut
1606
1521
-
Ser
TGA
[ENA]
¡û
>WENV182863623
OKPU01000114
[OKPU] human gut metagenome; human gut
28681
28596
-
Ser
TGA
[ENA]
¡û
>W141284955
JAND01000003
Gammaproteobacteria
Klebsiella sp. AS10 [JAND]
30705
30620
-
Ser
TGA
[ENA]
¡û
>WENV182947930
OKVN01000457
[OKVN] human gut metagenome; human gut
11311
11396
+
Ser
TGA
[ENA]
¡û
>WENV182960854
OKWK01000029
[OKWK] human gut metagenome; stool
221851
221936
+
Ser
TGA
[ENA]
¡û
>WENV170657711
JTFP01011419
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
2253
2338
+
Ser
TGA
[ENA]
¡û
>W1910152655
BIKX01000009
Gammaproteobacteria
Klebsiella pneumoniae TUM14124 [BIKX]
23223
23138
-
Ser
TGA
[ENA]
¡û
>W1910457058
FWMT01000024
Gammaproteobacteria
Klebsiella variicola VRCO0375 [FWMT]
13841
13926
+
Ser
TGA
[ENA]
¡û
>W1910457211
FWMV01000024
Gammaproteobacteria
Klebsiella variicola VRCO0376 [FWMV]
11466
11551
+
Ser
TGA
[ENA]
¡û
>W1910663229
MBNM01000012
Gammaproteobacteria
Klebsiella pneumoniae CF987 [MBNM]
117248
117333
+
Ser
TGA
[ENA]
¡û
>W1910860177
NCLI01000005
Gammaproteobacteria
Klebsiella variicola COL-Kpn2 [NCLI]
23546
23461
-
Ser
TGA
[ENA]
¡û
>W1910861247
NCLW01000058
Gammaproteobacteria
Klebsiella pneumoniae COL-Kpn17 [NCLW]
48282
48367
+
Ser
TGA
[ENA]
¡û
>W1911150486
NPGL01000008
Gammaproteobacteria
Raoultella planticola R3467 [NPGL]
37756
37671
-
Ser
TGA
[ENA]
¡û
>W1911425004
NXHG01000008
Gammaproteobacteria
Klebsiella quasipneumoniae 46 [NXHG]
216923
217008
+
Ser
TGA
[ENA]
¡û
>W1911548465
OVDM01000014
Gammaproteobacteria
Klebsiella variicola KCRI-198C [OVDM]
137172
137257
+
Ser
TGA
[ENA]
¡û
>W1911548671
OVDP01000003
Gammaproteobacteria
Klebsiella variicola KCRI-201B [OVDP]
28158
28073
-
Ser
TGA
[ENA]
¡û
>W1911552868
PCFT01000064
Gammaproteobacteria
Klebsiella pneumoniae XPY193 [PCFT]
258
173
-
Ser
TGA
[ENA]
¡û
>W1810134536
PIED01000502
Gammaproteobacteria
Klebsiella pneumoniae C42 [PIED]
751
836
+
Ser
TGA
[ENA]
¡û
>W1810638000
QIWC01000029
Gammaproteobacteria
Klebsiella pneumoniae WUSM_KP_72 [QIWC]
41853
41938
+
Ser
TGA
[ENA]
¡û
>W1810836579
QSRY01000002
Gammaproteobacteria
Klebsiella pneumoniae TF06-5AC [QSRY]
279278
279363
+
Ser
TGA
[ENA]
¡û
>W2010155162
CAAGYH010000005
Gammaproteobacteria
Klebsiella quasipneumoniae 5012STDY7312674 [CAAGYH]
374951
375036
+
Ser
TGA
[ENA]
¡û
>W2010199031
CABGNG010000028
Gammaproteobacteria
Raoultella planticola 4928STDY7071414 [CABGNG]
22816
22731
-
Ser
TGA
[ENA]
¡û
>W2010303529
CABVMC010000025
Gammaproteobacteria
Klebsiella quasipneumoniae [CABVMC]
34078
34163
+
Ser
TGA
[ENA]
¡û
>W2010408271
FWMT01000024
Gammaproteobacteria
Klebsiella variicola VRCO0375 [FWMT]
13841
13926
+
Ser
TGA
[ENA]
¡û
>W2010408352
FWMV01000024
Gammaproteobacteria
Klebsiella variicola VRCO0376 [FWMV]
11466
11551
+
Ser
TGA
[ENA]
¡û
>W2010433140
JAAABE010000001
Gammaproteobacteria
Klebsiella sp. Q2 [JAAABE]
255020
254935
-
Ser
TGA
[ENA]
¡û
>W2010937095
NCLI01000005
Gammaproteobacteria
Klebsiella variicola COL-Kpn2 [NCLI]
23546
23461
-
Ser
TGA
[ENA]
¡û
>W2011023252
NPGL01000008
Gammaproteobacteria
Raoultella planticola R3467 [NPGL]
37756
37671
-
Ser
TGA
[ENA]
¡û
>W2011144634
NXHG01000008
Gammaproteobacteria
Klebsiella quasipneumoniae 46 [NXHG]
216923
217008
+
Ser
TGA
[ENA]
¡û
>W2011174526
OVDM01000014
Gammaproteobacteria
Klebsiella variicola KCRI-198C [OVDM]
137172
137257
+
Ser
TGA
[ENA]
¡û
>W2011174648
OVDP01000003
Gammaproteobacteria
Klebsiella variicola KCRI-201B [OVDP]
28158
28073
-
Ser
TGA
[ENA]
¡û
>W2011811615
UFBF01000008
Gammaproteobacteria
Klebsiella quasipneumoniae 4300STDY6636965 [UFBF]
12564
12479
-
Ser
TGA
[ENA]
¡û
>W2011811864
UFCJ01000009
Gammaproteobacteria
Klebsiella quasipneumoniae 4300STDY6636971 [UFCJ]
13244
13159
-
Ser
TGA
[ENA]
¡û
>W2011826590
UGJK01000001
Gammaproteobacteria
Klebsiella aerogenes NCTC9499 [UGJK]
1278357
1278272
-
Ser
TGA
[ENA]
¡û
>W2012429732
WSQG01000046
Gammaproteobacteria
Enterobacteriaceae bacterium 8376wD9 [WSQG]
22750
22665
-
Ser
TGA
[ENA]
¡û
>W2012430048
WSQK01000007
Gammaproteobacteria
Enterobacteriaceae bacterium 8376wB8 [WSQK]
33817
33732
-
Ser
TGA
[ENA]
¡û
>W2110377001
JADRTN010000009
Gammaproteobacteria
Klebsiella sp. LTGPAF-6F KLO00035 [JADRTN]
30730
30645
-
Ser
TGA
[ENA]
¡û
>C211181959
CP063874
Gammaproteobacteria
Klebsiella quasipneumoniae S174-1 [CP063874]
366241
366156
-
Ser
TGA
-
¡û
>C211389619
CP081896
Gammaproteobacteria
Klebsiella pneumoniae PA-01 [CP081896]
2896757
2896672
-
Ser
TGA
-
¡û
>C211414604
LR890291
Gammaproteobacteria
Klebsiella pneumoniae KSB1_1B [LR890291]
2932916
2932831
-
Ser
TGA
-
¡û
>C211422434
LR890735
Gammaproteobacteria
Klebsiella pneumoniae [LR890735]
2910527
2910442
-
Ser
TGA
-
¡û
>C211422435
LR890735
Gammaproteobacteria
Klebsiella pneumoniae [LR890735]
2740778
2740693
-
Ser
TGA
-
¡û
>C231178423
CP083066
Gammaproteobacteria
Klebsiella pneumoniae 1613015451 [CP083066]
3011972
3011887
-
Ser
TGA
-
¡û
>C231326339
CP093010
Gammaproteobacteria
Klebsiella michiganensis K342 [CP093010]
3386101
3386016
-
Ser
TGA
-
¡û
>C231406124
CP098758
Gammaproteobacteria
Klebsiella pneumoniae KP167 [CP098758]
4090584
4090669
+
Ser
TGA
-
¡û
>C231428183
CP100511
Gammaproteobacteria
Klebsiella pneumoniae LH50-a [CP100511]
2364895
2364980
+
Ser
TGA
-
¡û
>C231428268
CP100515
Gammaproteobacteria
Klebsiella pneumoniae LH35-d [CP100515]
2366702
2366787
+
Ser
TGA
-
¡û
>C231559630
CP114375
Gammaproteobacteria
Klebsiella pneumoniae KP6870155 [CP114375]
3014119
3014034
-
Ser
TGA
-
¡û
>W2310002311
AAZMGR010000012
Gammaproteobacteria
Enterobacter roggenkampii [AAZMGR]
144252
144337
+
Ser
TGA
[ENA]
¡û
>W1511441125
JUQD01000029
Gammaproteobacteria
Klebsiella pneumoniae 863_KPNE [JUQD]
176
91
-
Ser
TGA
[ENA]
¡û
>W1511455725
JVGY01000047
Gammaproteobacteria
Klebsiella michiganensis 442_KOXY [JVGY]
4056
3971
-
Ser
TGA
[ENA]
¡û
>C161059862
CP013711
Gammaproteobacteria
Klebsiella pneumoniae J1 [CP013711]
4340697
4340782
+
Ser
TGA
-
¡û
>W1610490837
FLEN01000039
Gammaproteobacteria
Klebsiella pneumoniae [FLEN]
7512
7597
+
Ser
TGA
[ENA]
¡û
>W1610494136
FLGH01000010
Gammaproteobacteria
Klebsiella pneumoniae [FLGH]
215161
215246
+
Ser
TGA
[ENA]
¡û
>W1610498496
FLIQ01000005
Gammaproteobacteria
Klebsiella variicola pneumoniae [FLIQ]
1434
1349
-
Ser
TGA
[ENA]
¡û
>W1610888334
LROW01000011
Gammaproteobacteria
Klebsiella pneumoniae [LROW]
221806
221891
+
Ser
TGA
[ENA]
¡û
>W1710484307
FLEN01000039
Gammaproteobacteria
Klebsiella pneumoniae [FLEN]
7512
7597
+
Ser
TGA
[ENA]
¡û
>W1710487606
FLGH01000010
Gammaproteobacteria
Klebsiella pneumoniae [FLGH]
215161
215246
+
Ser
TGA
[ENA]
¡û
>W1710491966
FLIQ01000005
Gammaproteobacteria
Klebsiella variicola pneumoniae [FLIQ]
1434
1349
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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