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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88786 (128 seq.)
>WENV180697774
ODDE01004585
[ODDE] human metagenome; G_DNA_Supragingival plaque
1740
1825
+
Leu
GAG
[ENA]
¡û
>WENV180725628
ODGS01000479
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
8779
8694
-
Leu
GAG
[ENA]
¡û
>WENV180726093
ODGS01026382
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
326
241
-
Leu
GAG
[ENA]
¡û
>WENV180732471
ODGY01000694
[ODGY] human metagenome; G_DNA_Supragingival plaque
11867
11782
-
Leu
GAG
[ENA]
¡û
>WENV180733722
ODGZ01000595
[ODGZ] human metagenome; G_DNA_Supragingival plaque
20734
20819
+
Leu
GAG
[ENA]
¡û
>WENV180734626
ODGZ01015561
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1694
1609
-
Leu
GAG
[ENA]
¡û
>WENV180738778
ODHD01000509
[ODHD] human metagenome; G_DNA_Supragingival plaque
16766
16681
-
Leu
GAG
[ENA]
¡û
>WENV180755055
ODHU01010492
[ODHU] human metagenome; G_DNA_Supragingival plaque
786
701
-
Leu
GAG
[ENA]
¡û
>WENV180778426
ODIM01006358
[ODIM] human metagenome; G_DNA_Supragingival plaque
1750
1835
+
Leu
GAG
[ENA]
¡û
>WENV180788627
ODIS01085785
[ODIS] human metagenome; G_DNA_Supragingival plaque
560
475
-
Leu
GAG
[ENA]
¡û
>WENV180801606
ODJD01070453
[ODJD] human metagenome; G_DNA_Supragingival plaque
295
380
+
Leu
GAG
[ENA]
¡û
>WENV180814709
ODJO01039405
[ODJO] human metagenome; G_DNA_Supragingival plaque
388
473
+
Leu
GAG
[ENA]
¡û
>WENV180834017
ODKD01001856
[ODKD] human metagenome; G_DNA_Supragingival plaque
3842
3927
+
Leu
GAG
[ENA]
¡û
>WENV180844041
ODKN01027073
[ODKN] human metagenome; G_DNA_Supragingival plaque
78
163
+
Leu
GAG
[ENA]
¡û
>WENV180881437
ODMA01000326
[ODMA] human metagenome; G_DNA_Supragingival plaque
5177
5092
-
Leu
GAG
[ENA]
¡û
>WENV180891706
ODMQ01006170
[ODMQ] human metagenome; G_DNA_Supragingival plaque
794
709
-
Leu
GAG
[ENA]
¡û
>WENV180922168
ODTJ01001667
[ODTJ] human metagenome; G_DNA_Supragingival plaque
3944
4029
+
Leu
GAG
[ENA]
¡û
>WENV180924349
ODTK01003577
[ODTK] human metagenome; G_DNA_Supragingival plaque
3607
3692
+
Leu
GAG
[ENA]
¡û
>WENV180928355
ODTM01035187
[ODTM] human metagenome; G_DNA_Supragingival plaque
147
232
+
Leu
GAG
[ENA]
¡û
>WENV180945480
ODUC01177488
[ODUC] human metagenome; G_DNA_Supragingival plaque
17
102
+
Leu
GAG
[ENA]
¡û
>WENV180972674
ODUW01000034
[ODUW] human metagenome; G_DNA_Supragingival plaque
72854
72939
+
Leu
GAG
[ENA]
¡û
>WENV180973468
ODUW01006495
[ODUW] human metagenome; G_DNA_Supragingival plaque
1956
2041
+
Leu
GAG
[ENA]
¡û
>WENV180983749
ODVF01034387
[ODVF] human metagenome; G_DNA_Supragingival plaque
489
574
+
Leu
GAG
[ENA]
¡û
>WENV181002559
ODVX01000657
[ODVX] human metagenome; G_DNA_Supragingival plaque
16723
16638
-
Leu
GAG
[ENA]
¡û
>WENV181012458
ODWK01000406
[ODWK] human metagenome; G_DNA_Supragingival plaque
14968
15053
+
Leu
GAG
[ENA]
¡û
>WENV181019435
ODWU01003087
[ODWU] human metagenome; G_DNA_Supragingival plaque
2930
2845
-
Leu
GAG
[ENA]
¡û
>WENV181025941
ODXB01097235
[ODXB] human metagenome; G_DNA_Buccal mucosa
162
77
-
Leu
GAG
[ENA]
¡û
>WENV181029534
ODXF01000600
[ODXF] human metagenome; G_DNA_Supragingival plaque
13917
14002
+
Leu
GAG
[ENA]
¡û
>WENV181042596
ODXU01001272
[ODXU] human metagenome; G_DNA_Buccal mucosa
3901
3986
+
Leu
GAG
[ENA]
¡û
>WENV181050734
ODYD01049708
[ODYD] human metagenome; G_DNA_Supragingival plaque
143
228
+
Leu
GAG
[ENA]
¡û
>WENV181067408
ODZI01016789
[ODZI] human metagenome; G_DNA_Supragingival plaque
113
28
-
Leu
GAG
[ENA]
¡û
>WENV181070693
OEAE01006025
[OEAE] human metagenome; G_DNA_Supragingival plaque
1994
1909
-
Leu
GAG
[ENA]
¡û
>WENV181079032
OEAS01001484
[OEAS] human metagenome; G_DNA_Supragingival plaque
3669
3754
+
Leu
GAG
[ENA]
¡û
>WENV181091076
OEBC01011562
[OEBC] human metagenome; G_DNA_Supragingival plaque
2106
2191
+
Leu
GAG
[ENA]
¡û
>WENV181107733
OEEI01019169
[OEEI] human metagenome; G_DNA_Supragingival plaque
977
1062
+
Leu
GAG
[ENA]
¡û
>WENV181119873
OEFJ01000290
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
9809
9724
-
Leu
GAG
[ENA]
¡û
>WENV181135913
OEGI01000045
[OEGI] human metagenome; G_DNA_Supragingival plaque
71706
71791
+
Leu
GAG
[ENA]
¡û
>WENV181146150
OEHQ01001344
[OEHQ] human metagenome; G_DNA_Supragingival plaque
1523
1438
-
Leu
GAG
[ENA]
¡û
>WENV181152321
OEIA01000875
[OEIA] human metagenome; G_DNA_Supragingival plaque
3821
3906
+
Leu
GAG
[ENA]
¡û
>WENV181158729
OEIH01007990
[OEIH] human metagenome; G_DNA_Supragingival plaque
373
288
-
Leu
GAG
[ENA]
¡û
>WENV181160594
OEIK01015744
[OEIK] human metagenome; G_DNA_Supragingival plaque
1711
1626
-
Leu
GAG
[ENA]
¡û
>W141251784
CBQV010000838
Betaproteobacteria
Kingella kingae AA068 [CBQV]
130
45
-
Leu
GAG
[ENA]
¡û
>W141251828
CBQW010000841
Betaproteobacteria
Kingella kingae AA105 [CBQW]
313
228
-
Leu
GAG
[ENA]
¡û
>W141251874
CBQX010000561
Betaproteobacteria
Kingella kingae AA255 [CBQX]
992
907
-
Leu
GAG
[ENA]
¡û
>W141251919
CBQY010000217
Betaproteobacteria
Kingella kingae AA417 [CBQY]
29216
29131
-
Leu
GAG
[ENA]
¡û
>W141252065
CBRB010000900
Betaproteobacteria
Kingella kingae BB016 [CBRB]
134
49
-
Leu
GAG
[ENA]
¡û
>W141252108
CBRC010000889
Betaproteobacteria
Kingella kingae BB060 [CBRC]
14472
14387
-
Leu
GAG
[ENA]
¡û
>W141252155
CBRD010000482
Betaproteobacteria
Kingella kingae BB114 [CBRD]
123
38
-
Leu
GAG
[ENA]
¡û
>W141252355
CBRH010000988
Betaproteobacteria
Kingella kingae KK88 [CBRH]
6733
6648
-
Leu
GAG
[ENA]
¡û
>W141252536
CBRM010001061
Betaproteobacteria
Kingella kingae KK141 [CBRM]
118
33
-
Leu
GAG
[ENA]
¡û
>W141252580
CBRN010000289
Betaproteobacteria
Kingella kingae KK101 [CBRN]
9204
9119
-
Leu
GAG
[ENA]
¡û
>W141252679
CBRP010001035
Betaproteobacteria
Kingella kingae KK238 [CBRP]
139
54
-
Leu
GAG
[ENA]
¡û
>W141252721
CBRQ010001069
Betaproteobacteria
Kingella kingae KK93 [CBRQ]
188
103
-
Leu
GAG
[ENA]
¡û
>W141252805
CBRS010001037
Betaproteobacteria
Kingella kingae KK97 [CBRS]
114
29
-
Leu
GAG
[ENA]
¡û
>W141252847
CBRT010001095
Betaproteobacteria
Kingella kingae CC254 [CBRT]
9206
9121
-
Leu
GAG
[ENA]
¡û
>W141252890
CBRU010000986
Betaproteobacteria
Kingella kingae KK98 [CBRU]
114
29
-
Leu
GAG
[ENA]
¡û
>W141252936
CBRV010000993
Betaproteobacteria
Kingella kingae KK158 [CBRV]
190
105
-
Leu
GAG
[ENA]
¡û
>W141252979
CBRW010001096
Betaproteobacteria
Kingella kingae D2363 [CBRW]
14450
14365
-
Leu
GAG
[ENA]
¡û
>W141253024
CBRX010001029
Betaproteobacteria
Kingella kingae KK189 [CBRX]
185
100
-
Leu
GAG
[ENA]
¡û
>W141253069
CBRY010000779
Betaproteobacteria
Kingella kingae D7330 [CBRY]
161
76
-
Leu
GAG
[ENA]
¡û
>W141253114
CBRZ010000314
Betaproteobacteria
Kingella kingae KK260 [CBRZ]
9193
9108
-
Leu
GAG
[ENA]
¡û
>W141253160
CBSA010001452
Betaproteobacteria
Kingella kingae KK3 [CBSA]
1735
1650
-
Leu
GAG
[ENA]
¡û
>W141253202
CBSB010000635
Betaproteobacteria
Kingella kingae KK245 [CBSB]
190
105
-
Leu
GAG
[ENA]
¡û
>W141253247
CBSC010000239
Betaproteobacteria
Kingella kingae KK6 [CBSC]
15523
15438
-
Leu
GAG
[ENA]
¡û
>W141253344
CBSE010000969
Betaproteobacteria
Kingella kingae KK56 [CBSE]
201
116
-
Leu
GAG
[ENA]
¡û
>W141253387
CBSF010000139
Betaproteobacteria
Kingella kingae KK12 [CBSF]
93688
93603
-
Leu
GAG
[ENA]
¡û
>W141253487
CBSH010000158
Betaproteobacteria
Kingella kingae KK83 [CBSH]
49356
49271
-
Leu
GAG
[ENA]
¡û
>W141253532
CBSI010000154
Betaproteobacteria
Kingella kingae KK145 [CBSI]
93692
93607
-
Leu
GAG
[ENA]
¡û
>W141253580
CBSJ010000192
Betaproteobacteria
Kingella kingae KK156 [CBSJ]
29207
29122
-
Leu
GAG
[ENA]
¡û
>W141253625
CBSK010001006
Betaproteobacteria
Kingella kingae KK171 [CBSK]
1806
1721
-
Leu
GAG
[ENA]
¡û
>W141253666
CBSL010001134
Betaproteobacteria
Kingella kingae KK242 [CBSL]
15516
15431
-
Leu
GAG
[ENA]
¡û
>W141253712
CBSM010000310
Betaproteobacteria
Kingella kingae KK274 [CBSM]
10272
10187
-
Leu
GAG
[ENA]
¡û
>W141253758
CBSN010000239
Betaproteobacteria
Kingella kingae KK107 [CBSN]
29207
29122
-
Leu
GAG
[ENA]
¡û
>W141253804
CBSO010000534
Betaproteobacteria
Kingella kingae KK113 [CBSO]
193
108
-
Leu
GAG
[ENA]
¡û
>W141253848
CBSP010000693
Betaproteobacteria
Kingella kingae PV1748 [CBSP]
131
46
-
Leu
GAG
[ENA]
¡û
>W141253894
CBSQ010000630
Betaproteobacteria
Kingella kingae Vir5453 [CBSQ]
1993
1908
-
Leu
GAG
[ENA]
¡û
>W141253937
CBSR010000999
Betaproteobacteria
Kingella kingae KK60 [CBSR]
6756
6671
-
Leu
GAG
[ENA]
¡û
>W141253983
CBSS010001058
Betaproteobacteria
Kingella kingae KK128 [CBSS]
127
42
-
Leu
GAG
[ENA]
¡û
>W141254618
CBTD010001028
Betaproteobacteria
Kingella kingae KK75 [CBTD]
404
319
-
Leu
GAG
[ENA]
¡û
>W141254659
CBTE010001035
Betaproteobacteria
Kingella kingae KK190 [CBTE]
119
34
-
Leu
GAG
[ENA]
¡û
>W141254703
CBTF010000179
Betaproteobacteria
Kingella kingae KK199 [CBTF]
93699
93614
-
Leu
GAG
[ENA]
¡û
>W141254746
CBTG010000310
Betaproteobacteria
Kingella kingae KK411 [CBTG]
9201
9116
-
Leu
GAG
[ENA]
¡û
>W141266103
CCJT01000030
Betaproteobacteria
Kingella kingae [CCJT]
2314
2229
-
Leu
GAG
[ENA]
¡û
>W141267070
CCNJ01000033
Betaproteobacteria
Kingella negevensis Sch538 [CCNJ]
17449
17364
-
Leu
GAG
[ENA]
¡û
>C181037668
CP019448
Betaproteobacteria
Simonsiella muelleri ATCC 29453 [CP019448]
751127
751212
+
Leu
GAG
-
¡û
>C181212604
LS483426
Betaproteobacteria
Kingella kingae NCTC10529 [LS483426]
9080
9165
+
Leu
GAG
-
¡û
>W09126574
ACJW02000002
Betaproteobacteria
Kingella oralis ATCC 51147 [ACJW]
10067
9982
-
Leu
GAG
[ENA]
¡û
>W1910230137
FOJK01000033
Betaproteobacteria
Kingella kingae ATCC 23330 [FOJK]
163500
163585
+
Leu
GAG
[ENA]
¡û
>W1910471781
FXBH01000039
Betaproteobacteria
Kingella negevensis SW7208426 [FXBH]
89136
89221
+
Leu
GAG
[ENA]
¡û
>W1910496673
FXUV01000052
Betaproteobacteria
Kingella negevensis [FXUV]
3656
3571
-
Leu
GAG
[ENA]
¡û
>W1910496714
FXUV02000032
Betaproteobacteria
Kingella negevensis [FXUV]
3584
3499
-
Leu
GAG
[ENA]
¡û
>W1910551193
FZRL01000011
Betaproteobacteria
Kingella denitrificans [FZRL]
17158
17243
+
Leu
GAG
[ENA]
¡û
>W1910562097
FZZR01000001
Betaproteobacteria
Neisseria meningitidis [FZZR]
208586
208501
-
Leu
GAG
[ENA]
¡û
>W1911480061
OAFC01000001
Betaproteobacteria
Neisseria meningitidis [OAFC]
35433
35518
+
Leu
GAG
[ENA]
¡û
>W1911480931
OAFR01000132
Betaproteobacteria
Neisseria meningitidis [OAFR]
759
674
-
Leu
GAG
[ENA]
¡û
>W1911481948
OAGL01000008
Betaproteobacteria
Neisseria meningitidis [OAGL]
50950
51035
+
Leu
GAG
[ENA]
¡û
>W1911482572
OAGV01000057
Betaproteobacteria
Neisseria meningitidis [OAGV]
7867
7782
-
Leu
GAG
[ENA]
¡û
>W1911483089
OAHF01000042
Betaproteobacteria
Neisseria meningitidis [OAHF]
17915
18000
+
Leu
GAG
[ENA]
¡û
>W1911483836
OAHU01000001
Betaproteobacteria
Neisseria meningitidis [OAHU]
71193
71108
-
Leu
GAG
[ENA]
¡û
>W1911486487
OAJV01000004
Betaproteobacteria
Neisseria meningitidis [OAJV]
17136
17221
+
Leu
GAG
[ENA]
¡û
>W1911489270
OALW01000012
Betaproteobacteria
Neisseria meningitidis [OALW]
18523
18608
+
Leu
GAG
[ENA]
¡û
>W2010384113
FOJK01000033
Betaproteobacteria
Kingella kingae ATCC 23330 [FOJK]
163500
163585
+
Leu
GAG
[ENA]
¡û
>W2010410686
FXBH01000039
Betaproteobacteria
Kingella negevensis SW7208426 [FXBH]
89136
89221
+
Leu
GAG
[ENA]
¡û
>W2010416417
FXUV02000032
Betaproteobacteria
Kingella negevensis [FXUV]
3584
3499
-
Leu
GAG
[ENA]
¡û
>W2010432723
FZRL01000011
Betaproteobacteria
Kingella denitrificans [FZRL]
17158
17243
+
Leu
GAG
[ENA]
¡û
>W2011826420
UGJI01000001
Betaproteobacteria
Kingella kingae NCTC10746 [UGJI]
1158458
1158373
-
Leu
GAG
[ENA]
¡û
>W2011826647
UGJL01000001
Betaproteobacteria
Kingella denitrificans NCTC10995 [UGJL]
547748
547663
-
Leu
GAG
[ENA]
¡û
>W2110199750
JACBKT010000008
Betaproteobacteria
Kingella kingae chl3548 [JACBKT]
86404
86489
+
Leu
GAG
[ENA]
¡û
>W2110199804
JACBKU010000009
Betaproteobacteria
Kingella kingae chl4475 [JACBKU]
1036
951
-
Leu
GAG
[ENA]
¡û
>W2110199852
JACBKV010000009
Betaproteobacteria
Kingella kingae chl2764 [JACBKV]
86404
86489
+
Leu
GAG
[ENA]
¡û
>C211219644
CP065999
Betaproteobacteria
Kingella denitrificans FDAARGOS_1060 [CP065999]
661958
662043
+
Leu
GAG
-
¡û
>C211406169
CP083930
Betaproteobacteria
Simonsiella muelleri DSM 2579 [CP083930]
1498503
1498588
+
Leu
GAG
-
¡û
>W10111240
ADCY01000077
Betaproteobacteria
Simonsiella muelleri ATCC 29453 [ADCY]
16170
16085
-
Leu
GAG
[ENA]
¡û
>C231300245
CP091518
Betaproteobacteria
Kingella kingae 4177/66 [CP091518]
1683686
1683771
+
Leu
GAG
-
¡û
>C231314982
CP092357
Betaproteobacteria
Wielerella bovis 10LB456 [CP092357]
1634570
1634485
-
Leu
GAG
-
¡û
>C231315040
CP092358
Betaproteobacteria
Wielerella bovis 09LB414 [CP092358]
1576743
1576658
-
Leu
GAG
-
¡û
>C231315099
CP092359
Betaproteobacteria
Wielerella bovis 08LB461 [CP092359]
1591741
1591656
-
Leu
GAG
-
¡û
>C231315139
CP092360
Betaproteobacteria
Wielerella bovis 07LB258 [CP092360]
1058992
1059077
+
Leu
GAG
-
¡û
>C231315222
CP092361
Betaproteobacteria
Wielerella bovis CCUG 44465 [CP092361]
1571225
1571140
-
Leu
GAG
-
¡û
>C241092673
CP045141
Betaproteobacteria
Kingella kingae F41215CHC [CP045141]
1492816
1492901
+
Leu
GAG
-
¡û
>C241141691
CP050135
Betaproteobacteria
Kingella kingae ATCC 23331 [CP050135]
436500
436415
-
Leu
GAG
-
¡û
>C241141722
CP050136
Betaproteobacteria
Kingella kingae ATCC 23332 [CP050136]
1597340
1597425
+
Leu
GAG
-
¡û
>W11114091
ADCY01000077
Betaproteobacteria
Simonsiella muelleri ATCC 29453 [ADCY]
16170
16085
-
Leu
GAG
[ENA]
¡û
>W11151286
AEWV01000042
Betaproteobacteria
Kingella denitrificans ATCC 33394 [AEWV]
52422
52507
+
Leu
GAG
[ENA]
¡û
>W11163382
AFHS01000046
Betaproteobacteria
Kingella kingae ATCC 23330 [AFHS]
5283
5198
-
Leu
GAG
[ENA]
¡û
>C161106905
LN869922
Betaproteobacteria
Kingella kingae KWG1 [LN869922]
1984358
1984443
+
Leu
GAG
-
¡û
>W121060769
AJGB01000045
Betaproteobacteria
Kingella kingae PYKK081 [AJGB]
86483
86568
+
Leu
GAG
[ENA]
¡û
>W121110577
ALIJ01000043
Betaproteobacteria
Kingella kingae 11220434 [ALIJ]
93674
93589
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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