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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88940 (87 seq.)
>W1710863617
LMFG01000003
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
63627
63710
+
Leu
GAG
[ENA]
¡û
>W1710868740
LMJI01000001
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
3396921
3396838
-
Leu
GAG
[ENA]
¡û
>W1710878858
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
1225586
1225669
+
Leu
GAG
[ENA]
¡û
>W1710878859
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
1227244
1227327
+
Leu
GAG
[ENA]
¡û
>W1712081470
NHOD01000284
Actinomycetota
Streptomyces griseiscabiei scabiei [NHOD]
2548
2465
-
Leu
GAG
[ENA]
¡û
>C171131341
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
2435704
2435621
-
Leu
GAG
-
¡û
>W131227060
AUEW01000001
Actinomycetota
Cellulomonas sp. URHD0024 [AUEW]
78860
78943
+
Leu
GAG
[ENA]
¡û
>WENV180016657
FSVS01000086
[FSVS] metagenome; soil
2834
2751
-
Leu
GAG
[ENA]
¡û
>WENV180016676
FSVS01000793
[FSVS] metagenome; soil
2959
2876
-
Leu
GAG
[ENA]
¡û
>WENV180028858
FTJH01184916
[FTJH] metagenome; soil
840
757
-
Leu
GAG
[ENA]
¡û
>WENV180028941
FTJH01655521
[FTJH] metagenome; soil
1
84
+
Leu
GAG
[ENA]
¡û
>WENV181188823
OEOE01403032
[OEOE] activated sludge metagenome; Activated Sludge
70
154
+
Leu
GAG
[ENA]
¡û
>WENV181190109
OEOF01495119
[OEOF] activated sludge metagenome; Activated Sludge
101
185
+
Leu
GAG
[ENA]
¡û
>WENV181401914
OFTX01020587
[OFTX] sludge metagenome; sludge
736
653
-
Leu
GAG
[ENA]
¡û
>W141279324
JAGF01000001
Actinomycetota
Cellulomonas sp. KRMCY2 [JAGF]
4038576
4038493
-
Leu
GAG
[ENA]
¡û
>WENV183749715
PPFU01202641
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1453
1370
-
Leu
GAG
[ENA]
¡û
>WENV170010663
APMI01024477
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
7
92
+
Leu
GAG
[ENA]
¡û
>WENV170700448
LIDZ01013979
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
522
439
-
Leu
GAG
[ENA]
¡û
>WENV170979954
MTKZ01117086
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1057
972
-
Leu
GAG
[ENA]
¡û
>C181078626
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
2435726
2435643
-
Leu
GAG
-
¡û
>C191026503
CP023865
Actinomycetota
Actinoplanes teichomyceticus ATCC 31121 [CP023865]
2314260
2314177
-
Leu
GAG
-
¡û
>C191164672
CP039291
Actinomycetota
Cellulomonas shaoxiangyii Z28 [CP039291]
1642918
1643001
+
Leu
GAG
-
¡û
>W141758691
JNYT01005733
Actinomycetota
Ampullariella violaceochromogenes [JNYT]
1001
1084
+
Leu
GAG
[ENA]
¡û
>W141766932
JOEH01000013
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
104893
104810
-
Leu
GAG
[ENA]
¡û
>W141766959
JOEH01000055
Actinomycetota
Streptacidiphilus jeojiense [JOEH]
14010
14093
+
Leu
GAG
[ENA]
¡û
>W1910181071
BJLQ01000002
Actinomycetota
Cellulomonas gelida NBRC 3748 [BJLQ]
160262
160345
+
Leu
GAG
[ENA]
¡û
>W1910181162
BJLR01000045
Actinomycetota
Cellulomonas cellasea NBRC 3753 [BJLR]
60812
60895
+
Leu
GAG
[ENA]
¡û
>W1910547345
FZNR01000016
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
166532
166615
+
Leu
GAG
[ENA]
¡û
>W1810058176
PDJG01000001
Actinomycetota
Sanguibacter antarcticus DSM 18966 [PDJG]
1316309
1316392
+
Leu
GAG
[ENA]
¡û
>W1810918537
QWKP01000189
Actinomycetota
Cellulomonas rhizosphaerae NEAU-TCZ24 [QWKP]
19642
19725
+
Leu
GAG
[ENA]
¡û
>W2010094848
BJLR01000045
Actinomycetota
Cellulomonas cellasea NBRC 3753 [BJLR]
60812
60895
+
Leu
GAG
[ENA]
¡û
>W2010104242
BJYK01000001
Actinomycetota
Actinotalea fermentans NBRC 105374 [BJYK]
930700
930617
-
Leu
GAG
[ENA]
¡û
>W2010106460
BKAL01000014
Actinomycetota
Cellulomonas soli NBRC 109434 [BKAL]
60461
60544
+
Leu
GAG
[ENA]
¡û
>W2010429106
FZNR01000016
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
166532
166615
+
Leu
GAG
[ENA]
¡û
>W2010591760
JABELX010000001
Actinomycetota
Nocardia uniformis JCM 3224 [JABELX]
921941
921858
-
Leu
GAG
[ENA]
¡û
>W2010592368
JABENB010000003
Actinomycetota
Flexivirga sp. ID2601S [JABENB]
370254
370337
+
Leu
GAG
[ENA]
¡û
>W2010607338
JABMCI010000071
Actinomycetota
Cellulomonas humilata ATCC 25174 [JABMCI]
275378
275295
-
Leu
GAG
[ENA]
¡û
>W2010667090
JACBYE010000008
Actinomycetota
Sanguibacter inulinus DSM 100099 [JACBYE]
118648
118731
+
Leu
GAG
[ENA]
¡û
>W2010667091
JACBYE010000008
Actinomycetota
Sanguibacter inulinus DSM 100099 [JACBYE]
120306
120389
+
Leu
GAG
[ENA]
¡û
>W2010668256
JACBZJ010000001
Actinomycetota
Cellulomonas soli DSM 24484 [JACBZJ]
3952508
3952425
-
Leu
GAG
[ENA]
¡û
>W2010710688
JACHNB010000001
Actinomycetota
Actinoplanes octamycinicus DSM 45809 [JACHNB]
4430656
4430573
-
Leu
GAG
[ENA]
¡û
>W2010714113
JACHVQ010000001
Actinomycetota
Flexivirga oryzae DSM 105369 [JACHVQ]
1704673
1704590
-
Leu
GAG
[ENA]
¡û
>W2010714472
JACHVX010000001
Actinomycetota
Cellulomonas cellasea RAS26 [JACHVX]
1172083
1172000
-
Leu
GAG
[ENA]
¡û
>W2011416298
RFFI01000035
Actinomycetota
Cellulomonas sp. NEAU-YY56 [RFFI]
9542
9625
+
Leu
GAG
[ENA]
¡û
>W2011432168
RJJQ01000002
Actinomycetota
Flexivirga sp. BO-16 [RJJQ]
332314
332231
-
Leu
GAG
[ENA]
¡û
>W2011434069
RJKW01000001
Actinomycetota
Streptomyces sp. 844.5 [RJKW]
1756051
1756134
+
Leu
GAG
[ENA]
¡û
>W2011434128
RJKW01000002
Actinomycetota
Streptomyces sp. 844.5 [RJKW]
1170727
1170810
+
Leu
GAG
[ENA]
¡û
>W2011448281
RKHX01000001
Actinomycetota
Cellulomonas sp. PhB150 [RKHX]
66424
66507
+
Leu
GAG
[ENA]
¡û
>W2011655078
SOBN01000001
Actinomycetota
Streptomyces sp. 846.5 [SOBN]
865252
865169
-
Leu
GAG
[ENA]
¡û
>W2011655086
SOBN01000003
Actinomycetota
Streptomyces sp. 846.5 [SOBN]
900505
900422
-
Leu
GAG
[ENA]
¡û
>W2011687623
SRZI01000037
Actinomycetota
Cellulomonas sp. Z29 [SRZI]
5265
5348
+
Leu
GAG
[ENA]
¡û
>W2012047296
VIVQ01000001
Actinomycetota
Rudaeicoccus suwonensis DSM 19560 [VIVQ]
1680277
1680194
-
Leu
GAG
[ENA]
¡û
>W2012049237
VIWY01000002
Actinomycetota
Actinoplanes teichomyceticus DSM 43866 [VIWY]
999611
999528
-
Leu
GAG
[ENA]
¡û
>W2012141506
VTPA01000005
Actinomycetota
Actinoplanes teichomyceticus CPCC 203265 [VTPA]
245194
245111
-
Leu
GAG
[ENA]
¡û
>W2110025116
BMHI01000004
Actinomycetota
Flexivirga endophytica CGMCC 1.15085 [BMHI]
389728
389645
-
Leu
GAG
[ENA]
¡û
>W2110037618
BMQZ01000008
Actinomycetota
Actinoplanes ianthinogenes JCM 3249 [BMQZ]
192935
192852
-
Leu
GAG
[ENA]
¡û
>W2110050366
BMZJ01000002
Actinomycetota
Flexivirga endophytica KCTC 39536 [BMZJ]
389726
389643
-
Leu
GAG
[ENA]
¡û
>W2110059489
BOMR01000088
Actinomycetota
Actinoplanes octamycinicus NBRC 14524 [BOMR]
40730
40647
-
Leu
GAG
[ENA]
¡û
>W2110059693
BOMU01000079
Actinomycetota
Actinoplanes regularis NBRC 12514 [BOMU]
24841
24758
-
Leu
GAG
[ENA]
¡û
>W2110059801
BOMW01000047
Actinomycetota
Actinoplanes siamensis NBRC 109076 [BOMW]
17962
17879
-
Leu
GAG
[ENA]
¡û
>W2110059872
BOMX01000076
Actinomycetota
Actinoplanes teichomyceticus NBRC 13999 [BOMX]
18266
18349
+
Leu
GAG
[ENA]
¡û
>W2110181139
JABRXD010000068
Actinomycetota
Streptomyces brasiliscabiei IBSBF 2867 [JABRXD]
27277
27194
-
Leu
GAG
[ENA]
¡û
>W2110316684
JADGKM010000008
Actinomycetota
Sanguibacter inulinus DSM100099.1 [JADGKM]
118648
118731
+
Leu
GAG
[ENA]
¡û
>W2110316685
JADGKM010000008
Actinomycetota
Sanguibacter inulinus DSM100099.1 [JADGKM]
120306
120389
+
Leu
GAG
[ENA]
¡û
>W2110517206
JAFMUZ010000002
Actinomycetota
Cellulomonas sp. zg-ZUI22 [JAFMUZ]
354413
354330
-
Leu
GAG
[ENA]
¡û
>W10100650
ABUN01000001
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
100189
100106
-
Leu
GAG
[ENA]
¡û
>W10100651
ABUN01000001
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
99146
99063
-
Leu
GAG
[ENA]
¡û
>W2110556541
JAGJBZ010000002
Actinomycetota
Streptomyces scabiei NRRL B-2795 [JAGJBZ]
1963554
1963637
+
Leu
GAG
[ENA]
¡û
>W2110689538
JAINVH010000005
Actinomycetota
Streptomyces sp. HPF1205 [JAINVH]
286881
286964
+
Leu
GAG
[ENA]
¡û
>C211011441
AP023356
Actinomycetota
Actinoplanes ianthinogenes NBRC 13996 [AP023356]
7402526
7402443
-
Leu
GAG
-
¡û
>W1510001137
AXCX01000056
Actinomycetota
Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133 [AXCX]
4147
4230
+
Leu
GAG
[ENA]
¡û
>W1510013994
BBPM01000009
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
82714
82799
+
Leu
GAG
[ENA]
¡û
>W1510014030
BBPM01000039
Actinomycetota
Streptacidiphilus carbonis NBRC 100919 [BBPM]
3382
3297
-
Leu
GAG
[ENA]
¡û
>C231467476
CP103289
Actinomycetota
Cellulomonas sp. NS3 [CP103289]
2132312
2132395
+
Leu
GAG
-
¡û
>C241274219
CP126980
Actinomycetota
Actinoplanes oblitus NRRL 3884 [CP126980]
2480422
2480339
-
Leu
GAG
-
¡û
>W2310027958
BSRT01000013
Actinomycetota
Actinoplanes regularis NBRC 14065 [BSRT]
78883
78800
-
Leu
GAG
[ENA]
¡û
>C10111723
CP001819
Actinomycetota
Sanguibacter keddieii DSM 10542 [CP001819]
2357517
2357600
+
Leu
GAG
[Ensembl]
¡û
>C10111724
CP001819
Actinomycetota
Sanguibacter keddieii DSM 10542 [CP001819]
2358560
2358643
+
Leu
GAG
[Ensembl]
¡û
>W11100650
ABUN01000001
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
100189
100106
-
Leu
GAG
[ENA]
¡û
>W11100651
ABUN01000001
Actinomycetota
Sanguibacter keddieii DSM 10542 [ABUN]
99146
99063
-
Leu
GAG
[ENA]
¡û
>C121007291
CP003170
Actinomycetota
Actinoplanes sp. SE50/110 [CP003170]
2435661
2435578
-
Leu
GAG
[Ensembl]
¡û
>W1610080204
BDCE01000078
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
84831
84914
+
Leu
GAG
[ENA]
¡û
>W1610725963
LMFG01000003
Actinomycetota
Cellulomonas sp. Root137 [LMFG]
63627
63710
+
Leu
GAG
[ENA]
¡û
>W1610731086
LMJI01000001
Actinomycetota
Cellulomonas sp. Root930 [LMJI]
3396921
3396838
-
Leu
GAG
[ENA]
¡û
>W1610741204
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
1225586
1225669
+
Leu
GAG
[ENA]
¡û
>W1610741205
LMRH01000002
Actinomycetota
Sanguibacter sp. Leaf3 [LMRH]
1227244
1227327
+
Leu
GAG
[ENA]
¡û
>W1710078763
BDCE01000078
Actinomycetota
Nocardia uniformis NBRC 13702 [BDCE]
84831
84914
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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