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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88950 (50 seq.)
>W1710860775
LMDD01000006
Alphaproteobacteria
Caulobacter sp. Root342 [LMDD]
369
284
-
Tyr
GTA
[ENA]
¡û
>W1710860868
LMDF01000006
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
1133185
1133270
+
Tyr
GTA
[ENA]
¡û
>W1710863455
LMFD01000009
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
1668
1583
-
Tyr
GTA
[ENA]
¡û
>W1710864144
LMFQ01000021
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
388
303
-
Tyr
GTA
[ENA]
¡û
>W1710865990
LMHC01000025
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
203570
203655
+
Tyr
GTA
[ENA]
¡û
>W1710866037
LMHD01000048
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
49100
49015
-
Tyr
GTA
[ENA]
¡û
>W1710866798
LMHT01000032
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
122663
122748
+
Tyr
GTA
[ENA]
¡û
>W1711074017
LSJD01000086
Alphaproteobacteria
Caulobacter sp. CCH5-E12 [LSJD]
360
275
-
Tyr
GTA
[ENA]
¡û
>W1711501190
MKRI01000037
Alphaproteobacteria
Caulobacterales bacterium 68-7 [MKRI]
493
408
-
Tyr
GTA
[ENA]
¡û
>w018488
AATH01000001
Alphaproteobacteria
Caulobacter sp. K31 [AATH]
774849
774762
-
Tyr
GTA
[ENA]
¡û
>WENV180023754
FTIE01226689
[FTIE] metagenome; soil
91
6
-
Tyr
GTA
[ENA]
¡û
>WENV180027398
FTIY01013368
[FTIY] metagenome; soil
90
5
-
Tyr
GTA
[ENA]
¡û
>WENV180028763
FTJG01081272
[FTJG] metagenome; soil
88
3
-
Tyr
GTA
[ENA]
¡û
>WENV180030090
FTJL01146882
[FTJL] metagenome; soil
299
214
-
Tyr
GTA
[ENA]
¡û
>WENV180030443
FTJM01027087
[FTJM] metagenome; soil
217
132
-
Tyr
GTA
[ENA]
¡û
>WENV180031398
FTJO01053850
[FTJO] metagenome; soil
334
249
-
Tyr
GTA
[ENA]
¡û
>WENV180033768
FTKL01131638
[FTKL] metagenome; soil
201
116
-
Tyr
GTA
[ENA]
¡û
>WENV181223438
OFDC01016491
[OFDC] hot springs metagenome; Water
1208
1293
+
Tyr
GTA
[ENA]
¡û
>C181078930
CP023315
Alphaproteobacteria
Caulobacter vibrioides CB13b1a [CP023315]
1603391
1603476
+
Tyr
GTA
-
¡û
>C181179019
CP029479
Alphaproteobacteria
Phenylobacterium parvum HYN0004 [CP029479]
1105211
1105296
+
Tyr
GTA
-
¡û
>C191119757
CP034122
Alphaproteobacteria
Caulobacter vibrioides CB2A [CP034122]
1420022
1420107
+
Tyr
GTA
-
¡û
>W141779510
JONW01000011
Alphaproteobacteria
Caulobacter sp. UNC358MFTsu5.1 [JONW]
313504
313589
+
Tyr
GTA
[ENA]
¡û
>W141816072
JQJP01000024
Alphaproteobacteria
Caulobacter henricii [JQJP]
100535
100620
+
Tyr
GTA
[ENA]
¡û
>W141819018
JQLZ01000001
Alphaproteobacteria
Caulobacter henricii [JQLZ]
894
809
-
Tyr
GTA
[ENA]
¡û
>C09103119
CP001340
Alphaproteobacteria
Caulobacter vibrioides NA1000 [CP001340]
1423164
1423249
+
Tyr
GTA
[Ensembl]
¡û
>W1810069326
PEBF01000001
Alphaproteobacteria
Caulobacter sp. FWC2 [PEBF]
3403209
3403124
-
Tyr
GTA
[ENA]
¡û
>W1810073482
PEGF01000002
Alphaproteobacteria
Caulobacter sp. X [PEGF]
1587195
1587280
+
Tyr
GTA
[ENA]
¡û
>W1810474463
QAII01000024
Alphaproteobacteria
Caulobacter sp. HMWF025 [QAII]
392
307
-
Tyr
GTA
[ENA]
¡û
>W1810475022
QAIR01000240
Alphaproteobacteria
Caulobacter sp. HMWF009 [QAIR]
382
297
-
Tyr
GTA
[ENA]
¡û
>W2010696312
JACHCS010000001
Alphaproteobacteria
Caulobacter sp. YL-Caulobacter [JACHCS]
3767751
3767666
-
Tyr
GTA
[ENA]
¡û
>W2011485987
RRYI01000002
Alphaproteobacteria
Caulobacter sp. 602-1 [RRYI]
924768
924853
+
Tyr
GTA
[ENA]
¡û
>W2011626170
SLZL01000032
Alphaproteobacteria
Caulobacter sp. BK020 [SLZL]
399
314
-
Tyr
GTA
[ENA]
¡û
>W2011642307
SMZP01000001
Alphaproteobacteria
Caulobacter sp. RHG1 [SMZP]
417
332
-
Tyr
GTA
[ENA]
¡û
>W2012048390
VIWK01000017
Alphaproteobacteria
Caulobacter rhizosphaerae 3260 [VIWK]
386
301
-
Tyr
GTA
[ENA]
¡û
>W2110569116
JAGSGD010000001
Alphaproteobacteria
Phenylobacterium sp. 20VBR1 [JAGSGD]
2605807
2605722
-
Tyr
GTA
[ENA]
¡û
>C211399701
CP082923
Alphaproteobacteria
Caulobacter segnis CBR1 [CP082923]
1733012
1733097
+
Tyr
GTA
-
¡û
>C231562983
CP114871
Alphaproteobacteria
Caulobacter sp. NIBR2454 [CP114871]
2315356
2315271
-
Tyr
GTA
-
¡û
>W1511432236
JUGJ01000003
Alphaproteobacteria
Caulobacter sp. OV484 [JUGJ]
207305
207390
+
Tyr
GTA
[ENA]
¡û
>C121001829
CP002008
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [CP002008]
1587495
1587580
+
Tyr
GTA
[Ensembl]
¡û
>C161049345
CP013002
Alphaproteobacteria
Caulobacter henricii CB4 [CP013002]
1320030
1320115
+
Tyr
GTA
[Ensembl]
¡û
>W121086753
AKKF01000104
Alphaproteobacteria
Caulobacter sp. AP07 [AKKF]
311
226
-
Tyr
GTA
[ENA]
¡û
>W1610723121
LMDD01000006
Alphaproteobacteria
Caulobacter sp. Root342 [LMDD]
369
284
-
Tyr
GTA
[ENA]
¡û
>W1610723214
LMDF01000006
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
1133185
1133270
+
Tyr
GTA
[ENA]
¡û
>W1610725801
LMFD01000009
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
1668
1583
-
Tyr
GTA
[ENA]
¡û
>W1610726490
LMFQ01000021
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
388
303
-
Tyr
GTA
[ENA]
¡û
>W1610728336
LMHC01000025
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
203570
203655
+
Tyr
GTA
[ENA]
¡û
>W1610728383
LMHD01000048
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
49100
49015
-
Tyr
GTA
[ENA]
¡û
>W1610729144
LMHT01000032
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
122663
122748
+
Tyr
GTA
[ENA]
¡û
>W1610913322
LSJD01000086
Alphaproteobacteria
Caulobacter sp. CCH5-E12 [LSJD]
360
275
-
Tyr
GTA
[ENA]
¡û
>W1710565871
FORN01000077
Alphaproteobacteria
Caulobacter sp. UNC279MFTsu5.1 [FORN]
386
301
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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