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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.88987 (27 seq.)
>W1710880212
LMSE01000002
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
988518
988601
+
Leu
CAA
[ENA]
¡û
>W1711491932
MKJZ01000005
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
4319
4234
-
Leu
CAA
[ENA]
¡û
>W1711492003
MKKA01000060
Actinomycetota
Ornithinimicrobium sp. CNJ-824 [MKKA]
76125
76210
+
Leu
CAA
[ENA]
¡û
>WENV181166425
OEIU01000277
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4102
4019
-
Leu
CAA
[ENA]
¡û
>W141243018
CAJB01000344
Actinomycetota
Tetrasphaera japonica T1-X7 [CAJB]
4849
4764
-
Leu
CAA
[ENA]
¡û
>WENV170979970
MTKZ01118159
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1054
1137
+
Leu
CAA
[ENA]
¡û
>C181197148
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
461164
461247
+
Leu
CAA
-
¡û
>C191150929
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
2409888
2409804
-
Leu
CAA
-
¡û
>C191183690
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
1807888
1807803
-
Leu
CAA
-
¡û
>W141766752
JOEE01000005
Actinomycetota
Phycicoccus jejuensis [JOEE]
89645
89728
+
Leu
CAA
[ENA]
¡û
>W1810173602
PJNE01000001
Actinomycetota
Phycicoccus duodecadis DSM 12806 [PJNE]
3485887
3485970
+
Leu
CAA
[ENA]
¡û
>W1810535021
QDDJ01000002
Actinomycetota
Ornithinimicrobium cavernae KCTC 49018 [QDDJ]
291252
291167
-
Leu
CAA
[ENA]
¡û
>W2010668900
JACBZX010000001
Actinomycetota
Janibacter alkaliphilus DSM 24723 [JACBZX]
2856161
2856076
-
Leu
CAA
[ENA]
¡û
>W2011529226
SAYU02000008
Actinomycetota
Phycicoccus sp. CMS6Z-2 [SAYU]
29023
29106
+
Leu
CAA
[ENA]
¡û
>W2011552790
SDVA01000010
Actinomycetota
Serinicoccus sp. GP-T3-3 [SDVA]
73617
73702
+
Leu
CAA
[ENA]
¡û
>W2011616564
SKBS01000010
Actinomycetota
Serinicoccus sp. HY008 [SKBS]
90954
90870
-
Leu
CAA
[ENA]
¡û
>W2012029711
VFXM01000011
Actinomycetota
Ornithinimicrobium sp. DSM 17687 [VFXM]
76107
76192
+
Leu
CAA
[ENA]
¡û
>W2110029870
BMLB01000005
Actinomycetota
Ornithinimicrobium pekingense CGMCC 1.5362 [BMLB]
73617
73700
+
Leu
CAA
[ENA]
¡û
>W2110063462
BOPU01000001
Actinomycetota
Phycicoccus sp. DTK01 [BOPU]
740515
740432
-
Leu
CAA
[ENA]
¡û
>W2110105548
CAJGVE010000001
Actinomycetota
Janibacter melonis Marseille-P690 [CAJGVE]
274232
274316
+
Leu
CAA
[ENA]
¡û
>W2110481350
JAFDVD010000005
Actinomycetota
Phycicoccus sp. MQZ13P-5 [JAFDVD]
39659
39742
+
Leu
CAA
[ENA]
¡û
>W2110481403
JAFDVE010000009
Actinomycetota
Phycicoccus sp. CSK15P-2 [JAFDVE]
222514
222597
+
Leu
CAA
[ENA]
¡û
>W2110604324
JAHHWP010000017
Actinomycetota
Phycicoccus mangrovi KQZ13P-1 [JAHHWP]
57376
57293
-
Leu
CAA
[ENA]
¡û
>W2110604369
JAHHWQ010000018
Actinomycetota
Phycicoccus mangrovi MAQZ13P-2 [JAHHWQ]
90288
90371
+
Leu
CAA
[ENA]
¡û
>C241139289
CP049935
Actinomycetota
Phycicoccus sp. HDW14 [CP049935]
1493965
1493882
-
Leu
CAA
-
¡û
>C241158778
CP053707
Actinomycetota
Arthrobacter sp. NEB 688 [CP053707]
2934427
2934344
-
Leu
CAA
-
¡û
>W1610742558
LMSE01000002
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
988518
988601
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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