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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89004 (40 seq.)
>W131229057
AUGM01000006
Gammaproteobacteria
Ferrimonas senticii DSM 18821 [AUGM]
24792
24707
-
Leu
GAG
[ENA]
¡û
>W131045912
AMRX01000007
Gammaproteobacteria
Gayadomonas joobiniege G7 [AMRX]
426886
426801
-
Leu
GAG
[ENA]
¡û
>W131095755
AOPM01000072
Gammaproteobacteria
Pseudoalteromonas ruthenica CP76 [AOPM]
69020
68935
-
Leu
GAG
[ENA]
¡û
>W1711795599
MWPV01000001
Gammaproteobacteria
Pseudoalteromonas ulvae [MWPV]
951657
951742
+
Leu
GAG
[ENA]
¡û
>w014245
AAOH01000006
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
321020
321107
+
Leu
GAG
[ENA]
¡û
>W141067257
ARZY01000044
Gammaproteobacteria
Catenovulum agarivorans DS-2 [ARZY]
35370
35285
-
Leu
GAG
[ENA]
¡û
>WENV170361749
CETM01026007
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3035
3120
+
Leu
GAG
[ENA]
¡û
>WENV170454423
CEVA01038449
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
44191
44106
-
Leu
GAG
[ENA]
¡û
>C181010438
CP011032
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP011032,CP011033]
1275493
1275578
+
Leu
GAG
-
¡û
>C181136186
CP026604
Gammaproteobacteria
Saccharobesus litoralis CCB-QB4 [CP026604]
3305530
3305615
+
Leu
GAG
-
¡û
>C191083312
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
573315
573400
+
Leu
GAG
-
¡û
>W1810248833
PQBV01000042
Gammaproteobacteria
Pseudoalteromonas sp. T1lg10 [PQBV]
245810
245895
+
Leu
GAG
[ENA]
¡û
>W1810249060
PQBY01000002
Gammaproteobacteria
Pseudoalteromonas sp. T1lg22 [PQBY]
242218
242133
-
Leu
GAG
[ENA]
¡û
>W1810249464
PQCC01000018
Gammaproteobacteria
Pseudoalteromonas sp. T1lg48 [PQCC]
691800
691715
-
Leu
GAG
[ENA]
¡û
>W1810249595
PQCD01000053
Gammaproteobacteria
Pseudoalteromonas sp. T1lg75 [PQCD]
207562
207647
+
Leu
GAG
[ENA]
¡û
>W1810249645
PQCE01000015
Gammaproteobacteria
Pseudoalteromonas sp. T1lg76 [PQCE]
105077
104992
-
Leu
GAG
[ENA]
¡û
>W1810249781
PQCF01000032
Gammaproteobacteria
Pseudoalteromonas sp. T1lg88 [PQCF]
212504
212589
+
Leu
GAG
[ENA]
¡û
>W2011198800
PNBS01000004
Gammaproteobacteria
Pseudoalteromonas ruthenica S4388 [PNBS]
52652
52567
-
Leu
GAG
[ENA]
¡û
>W2011198905
PNBT01000022
Gammaproteobacteria
Pseudoalteromonas ruthenica S4382 [PNBT]
52996
52911
-
Leu
GAG
[ENA]
¡û
>W2011199423
PNCA01000011
Gammaproteobacteria
Pseudoalteromonas ruthenica S3257 [PNCA]
66358
66273
-
Leu
GAG
[ENA]
¡û
>W2011199505
PNCB01000021
Gammaproteobacteria
Pseudoalteromonas ruthenica S3245 [PNCB]
66376
66291
-
Leu
GAG
[ENA]
¡û
>W2011199538
PNCC01000011
Gammaproteobacteria
Pseudoalteromonas ruthenica S3138 [PNCC]
50597
50512
-
Leu
GAG
[ENA]
¡û
>W2011199609
PNCD01000015
Gammaproteobacteria
Pseudoalteromonas ruthenica S3136 [PNCD]
182053
182138
+
Leu
GAG
[ENA]
¡û
>W2011199652
PNCE01000012
Gammaproteobacteria
Pseudoalteromonas ruthenica S2899 [PNCE]
50417
50332
-
Leu
GAG
[ENA]
¡û
>W2011199685
PNCF01000001
Gammaproteobacteria
Pseudoalteromonas ruthenica S2898 [PNCF]
51010
50925
-
Leu
GAG
[ENA]
¡û
>W2011199793
PNCG01000005
Gammaproteobacteria
Pseudoalteromonas ruthenica S2897 [PNCG]
215940
216025
+
Leu
GAG
[ENA]
¡û
>W2011211942
PPSV01000012
Gammaproteobacteria
Pseudoalteromonas ruthenica S2756 [PPSV]
181245
181330
+
Leu
GAG
[ENA]
¡û
>W2011571062
SGPG01000021
Gammaproteobacteria
Pseudoalteromonas sp. CO325X [SGPG]
121913
121828
-
Leu
GAG
[ENA]
¡û
>W2110010770
AQHJ01000023
Gammaproteobacteria
Pseudoalteromonas ulvae UL12 [AQHJ]
70017
69932
-
Leu
GAG
[ENA]
¡û
>W2110581098
JAGXTQ010000001
Gammaproteobacteria
Pseudoalteromonas sp. BDTF-M6 [JAGXTQ]
220369
220454
+
Leu
GAG
[ENA]
¡û
>C201099885
CP041660
Gammaproteobacteria
Catenovulum sediminis WS1-A [CP041660, CP041661]
2641236
2641321
+
Leu
GAG
-
¡û
>W1510021823
BCAI01000004
Gammaproteobacteria
Pseudoalteromonas sp. SW0106-04 [BCAI]
178321
178406
+
Leu
GAG
[ENA]
¡û
>C231524250
CP109965
Gammaproteobacteria
Catenovulum sp. TS8 [CP109965]
721994
722079
+
Leu
GAG
-
¡û
>C241025512
CP023396
Gammaproteobacteria
Pseudoalteromonas ruthenica LMG 19699 [CP023396, CP023397]
1643512
1643427
-
Leu
GAG
-
¡û
>C241096292
CP045418
Gammaproteobacteria
Pseudoalteromonas sp. THAF3 [CP045418]
1084230
1084315
+
Leu
GAG
-
¡û
>C241149070
CP051180
Gammaproteobacteria
Ferrimonas lipolytica S7 [CP051180]
598828
598913
+
Leu
GAG
-
¡û
>W1511518214
JXXY01000001
Gammaproteobacteria
Pseudoalteromonas ruthenica S3258 [JXXY]
199731
199646
-
Leu
GAG
[ENA]
¡û
>W1511518290
JXXZ01000004
Gammaproteobacteria
Pseudoalteromonas ruthenica S3137 [JXXZ]
124353
124438
+
Leu
GAG
[ENA]
¡û
>W1511586737
LAZL01000033
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
599
514
-
Leu
GAG
[ENA]
¡û
>W121070181
AJWM01000048
Gammaproteobacteria
Catenovulum agarivorans YM01 [AJWM]
149990
150075
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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