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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89125 (101 seq.)
>w027765
ABCL01000009
Alphaproteobacteria
Roseovarius sp. TM1035 [ABCL]
48774
48687
-
Leu
CAG
[ENA]
¡û
>w012875
AAMV01000008
Alphaproteobacteria
Roseovarius sp. 217 [AAMV]
8285
8198
-
Leu
CAG
[ENA]
¡û
>WENV180103362
OAPA01020901
[OAPA] marine metagenome; ENVO:00002010
296
211
-
Leu
CAG
[ENA]
¡û
>WENV180209573
OBAL01004573
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1257
1342
+
Leu
CAG
[ENA]
¡û
>W141020459
AJKJ01000015
Alphaproteobacteria
Citreicella sp. 357 [AJKJ]
31387
31302
-
Leu
CAG
[ENA]
¡û
>WENV180394350
OBPS01001894
[OBPS] marine metagenome; ENVO:00002010 seawater
3037
3122
+
Leu
CAG
[ENA]
¡û
>WENV180395637
OBPT01057930
[OBPT] marine metagenome; ENVO:00002010 seawater
327
412
+
Leu
CAG
[ENA]
¡û
>W141043771
AMGO01000021
Alphaproteobacteria
Oceaniovalibus guishaninsula JLT2003 [AMGO]
218975
218890
-
Leu
CAG
[ENA]
¡û
>WENV180635527
OCRD01059630
[OCRD] marine metagenome; seawater
320
235
-
Leu
CAG
[ENA]
¡û
>WENV181120803
OEFK01064632
[OEFK] marine metagenome; ENVO:00002010 seawater
89
4
-
Leu
CAG
[ENA]
¡û
>WENV181122646
OEFM01086351
[OEFM] marine metagenome; ENVO:00000569 for seawater
91
6
-
Leu
CAG
[ENA]
¡û
>WENV182591699
OJIO01002320
[OJIO] seawater metagenome; Sea water
2532
2447
-
Leu
CAG
[ENA]
¡û
>W141278734
JAFT01000005
Alphaproteobacteria
Oceanicola sp. HL-35 [JAFT]
1474812
1474727
-
Leu
CAG
[ENA]
¡û
>WENV170228690
CEQG01032244
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2368
2283
-
Leu
CAG
[ENA]
¡û
>WENV170260512
CEQZ01055571
[CEQZ] marine metagenome genome assembly TARA_070_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
16
101
+
Leu
CAG
[ENA]
¡û
>WENV170268896
CERH01002357
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
840
925
+
Leu
CAG
[ENA]
¡û
>WENV170271431
CERJ01014959
[CERJ] marine metagenome genome assembly TARA_066_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
534
449
-
Leu
CAG
[ENA]
¡û
>WENV170940487
MDTG01343916
[MDTG] marine metagenome; seawater
4821
4736
-
Leu
CAG
[ENA]
¡û
>C181068128
CP022540
Alphaproteobacteria
Antarctobacter heliothermus SMS3 [CP022540]
1464808
1464723
-
Leu
CAG
-
¡û
>C181188003
CP030099
Alphaproteobacteria
Roseovarius sp. AK1035 [CP030099]
1010784
1010699
-
Leu
CAG
-
¡û
>W141562478
JHZF01000013
Alphaproteobacteria
Pseudooceanicola nanhaiensis DSM 18065 [JHZF]
370893
370978
+
Leu
CAG
[ENA]
¡û
>W141813548
JQEY01000003
Alphaproteobacteria
Palleronia rufa MOLA 401 [JQEY]
314096
314181
+
Leu
CAG
[ENA]
¡û
>W141818727
JQLS01000008
Alphaproteobacteria
Roseovarius sp. MCTG156(2b) [JQLS]
3456842
3456927
+
Leu
CAG
[ENA]
¡û
>W1910004998
AWWI01000027
Alphaproteobacteria
Puniceibacterium antarcticum SM1211 [AWWI]
4335
4250
-
Leu
CAG
[ENA]
¡û
>W1910547132
FZNN01000025
Alphaproteobacteria
Puniceibacterium sediminis DSM 29052 [FZNN]
43472
43557
+
Leu
CAG
[ENA]
¡û
>W1910548444
FZON01000006
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
134569
134654
+
Leu
CAG
[ENA]
¡û
>W1911239583
NSDV01000013
Alphaproteobacteria
Rhodobacteraceae bacterium La 6 [NSDV]
2625496
2625411
-
Leu
CAG
[ENA]
¡û
>W1810670804
QJSD01000009
Alphaproteobacteria
Primorskyibacter marinus PX7 [QJSD]
108538
108623
+
Leu
CAG
[ENA]
¡û
>W1810694752
QLMG01000042
Alphaproteobacteria
Salipiger aestuarii DSM 22011 [QLMG]
30649
30564
-
Leu
CAG
[ENA]
¡û
>W1810762258
QPMK01000001
Alphaproteobacteria
Thalassococcus profundi WRAS1 [QPMK]
13347
13432
+
Leu
CAG
[ENA]
¡û
>W2010073344
AWWI01000027
Alphaproteobacteria
Puniceibacterium antarcticum SM1211 [AWWI]
4335
4250
-
Leu
CAG
[ENA]
¡û
>W2010302714
CABVLE010000022
Alphaproteobacteria
Roseovarius sp. EC-SD190 [CABVLE]
404836
404751
-
Leu
CAG
[ENA]
¡û
>W2010302941
CABVLJ010000019
Alphaproteobacteria
Roseovarius sp. EC-HK134 [CABVLJ]
190180
190095
-
Leu
CAG
[ENA]
¡û
>W2010428893
FZNN01000025
Alphaproteobacteria
Puniceibacterium sediminis DSM 29052 [FZNN]
43472
43557
+
Leu
CAG
[ENA]
¡û
>W2010430205
FZON01000006
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
134569
134654
+
Leu
CAG
[ENA]
¡û
>W2010774059
LIGK01000041
Alphaproteobacteria
Salipiger aestuarii 328 [LIGK]
7296
7381
+
Leu
CAG
[ENA]
¡û
>W2010774100
LIGL01000042
Alphaproteobacteria
Salipiger aestuarii 329 [LIGL]
30246
30161
-
Leu
CAG
[ENA]
¡û
>W2010774142
LIQE01000040
Alphaproteobacteria
Salipiger aestuarii AD8 [LIQE]
7297
7382
+
Leu
CAG
[ENA]
¡û
>W2011066178
NSDV01000013
Alphaproteobacteria
Rhodobacteraceae bacterium La 6 [NSDV]
2625496
2625411
-
Leu
CAG
[ENA]
¡û
>W2011353729
RAPE01000004
Alphaproteobacteria
Roseovarius sp. HN-E21 [RAPE]
110336
110421
+
Leu
CAG
[ENA]
¡û
>W2011626588
SLZU01000010
Alphaproteobacteria
Primorskyibacter sedentarius DSM 104836 [SLZU]
165510
165595
+
Leu
CAG
[ENA]
¡û
>W2011706585
SWKO01000005
Alphaproteobacteria
Marivita sp. LZ-15-2 [SWKO]
50968
50883
-
Leu
CAG
[ENA]
¡û
>W2012104993
VOJI01000003
Alphaproteobacteria
Puniceibacterium confluentis JSSK-17 [VOJI]
263203
263288
+
Leu
CAG
[ENA]
¡û
>W2012400897
WNXQ01000010
Alphaproteobacteria
Pseudooceanicola sp. 216_PA32_1 [WNXQ]
10799
10884
+
Leu
CAG
[ENA]
¡û
>W2110022205
BMFC01000001
Alphaproteobacteria
Marivita lacus CGMCC 1.12478 [BMFC]
824347
824432
+
Leu
CAG
[ENA]
¡û
>W2110028219
BMJV01000003
Alphaproteobacteria
Paraphaeobacter pallidus CGMCC 1.15762 [BMJV]
68154
68239
+
Leu
CAG
[ENA]
¡û
>W2110030014
BMLF01000002
Alphaproteobacteria
Pseudooceanicola nanhaiensis CGMCC 1.6293 [BMLF]
1053303
1053218
-
Leu
CAG
[ENA]
¡û
>W2110469847
JAFBWU010000019
Alphaproteobacteria
Marivita cryptomonadis MC36-87 [JAFBWU]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110469888
JAFBWV010000019
Alphaproteobacteria
Marivita cryptomonadis MC36-85 [JAFBWV]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110469931
JAFBWW010000019
Alphaproteobacteria
Marivita cryptomonadis MC36-72 [JAFBWW]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110469974
JAFBWX010000019
Alphaproteobacteria
Marivita cryptomonadis MC36-71 [JAFBWX]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470017
JAFBWY010000019
Alphaproteobacteria
Marivita cryptomonadis MC36-70 [JAFBWY]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470060
JAFBWZ010000019
Alphaproteobacteria
Marivita cryptomonadis MC36-125 [JAFBWZ]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470105
JAFBXA010000019
Alphaproteobacteria
Marivita cryptomonadis MC36-107 [JAFBXA]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470148
JAFBXB010000019
Alphaproteobacteria
Marivita cryptomonadis MC36-106 [JAFBXB]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470189
JAFBXC010000019
Alphaproteobacteria
Marivita cryptomonadis MC36-105 [JAFBXC]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470232
JAFBXD010000019
Alphaproteobacteria
Marivita cryptomonadis MC36-104 [JAFBXD]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470275
JAFBXE010000019
Alphaproteobacteria
Marivita cryptomonadis CC28-69 [JAFBXE]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470318
JAFBXF010000019
Alphaproteobacteria
Marivita cryptomonadis CC28-63 [JAFBXF]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470361
JAFBXG010000019
Alphaproteobacteria
Marivita cryptomonadis CC28-62 [JAFBXG]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470400
JAFBXH010000019
Alphaproteobacteria
Marivita cryptomonadis CC28-61 [JAFBXH]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470443
JAFBXI010000019
Alphaproteobacteria
Marivita cryptomonadis MP20-5 [JAFBXI]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470486
JAFBXJ010000019
Alphaproteobacteria
Marivita cryptomonadis MP20-56 [JAFBXJ]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470529
JAFBXK010000019
Alphaproteobacteria
Marivita cryptomonadis MP20-53 [JAFBXK]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470572
JAFBXL010000019
Alphaproteobacteria
Marivita cryptomonadis MP20-50 [JAFBXL]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470615
JAFBXM010000019
Alphaproteobacteria
Marivita cryptomonadis MP20-4 [JAFBXM]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470658
JAFBXN010000019
Alphaproteobacteria
Marivita cryptomonadis MP20-48 [JAFBXN]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470701
JAFBXO010000020
Alphaproteobacteria
Marivita cryptomonadis MP20-44 [JAFBXO]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470744
JAFBXP010000019
Alphaproteobacteria
Marivita cryptomonadis MP20-37 [JAFBXP]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470787
JAFBXQ010000018
Alphaproteobacteria
Marivita cryptomonadis MP20-36 [JAFBXQ]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470830
JAFBXR010000019
Alphaproteobacteria
Marivita cryptomonadis MP20-17 [JAFBXR]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470873
JAFBXS010000019
Alphaproteobacteria
Marivita cryptomonadis MP20-15 [JAFBXS]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470916
JAFBXT010000019
Alphaproteobacteria
Marivita cryptomonadis MP20-14 [JAFBXT]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110470959
JAFBXU010000019
Alphaproteobacteria
Marivita cryptomonadis MP20-11 [JAFBXU]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110471002
JAFBXV010000019
Alphaproteobacteria
Marivita cryptomonadis MP20-119 [JAFBXV]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110471045
JAFBXW010000019
Alphaproteobacteria
Marivita cryptomonadis MP20-118 [JAFBXW]
50919
50834
-
Leu
CAG
[ENA]
¡û
>W2110612071
JAHKQA010000105
Alphaproteobacteria
Citreicella sp. C3M06 [JAHKQA]
26311
26396
+
Leu
CAG
[ENA]
¡û
>W2110661608
JAHXRP010000002
Alphaproteobacteria
Roseovarius mucosus Rose1 [JAHXRP]
394193
394278
+
Leu
CAG
[ENA]
¡û
>W2110685824
JAIMID010000005
Alphaproteobacteria
Roseobacteraceae bacterium T40-1 [JAIMID]
187217
187302
+
Leu
CAG
[ENA]
¡û
>C231232717
CP086764
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae TT37-74 [CP086764]
1391604
1391519
-
Leu
CAG
-
¡û
>C231233349
CP086886
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-67 [CP086886]
3679327
3679242
-
Leu
CAG
-
¡û
>C231233392
CP086894
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-37 [CP086894]
3683170
3683085
-
Leu
CAG
-
¡û
>C231233493
CP086909
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-34 [CP086909]
856756
856671
-
Leu
CAG
-
¡û
>C231233951
CP087002
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae SC1-105 [CP087002]
3682445
3682360
-
Leu
CAG
-
¡û
>C231234037
CP087016
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC52-70 [CP087016]
3333162
3333247
+
Leu
CAG
-
¡û
>C231234189
CP087051
Alphaproteobacteria
Pseudosulfitobacter pseudonitzschiae MC36-43 [CP087051]
173702
173787
+
Leu
CAG
-
¡û
>C231611526
CP118494
Alphaproteobacteria
Roseovarius tolerans EL-164 [CP118494]
31760
31845
+
Leu
CAG
-
¡û
>C241275448
CP127165
Alphaproteobacteria
Marivivens sp. LCG002 [CP127165]
2780632
2780717
+
Leu
CAG
-
¡û
>W1511564704
LADY01000056
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
120547
120462
-
Leu
CAG
[ENA]
¡û
>W1511640270
LDPY01000001
Alphaproteobacteria
Puniceibacterium sp. IMCC21224 [LDPY]
669485
669400
-
Leu
CAG
[ENA]
¡û
>W1610014768
AONH01000001
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
108601
108516
-
Leu
CAG
[ENA]
¡û
>W1710011659
AONH01000001
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
108601
108516
-
Leu
CAG
[ENA]
¡û
>W1710015559
AQQU01000001
Alphaproteobacteria
Oceanicola sp. 22II-s10i [AQQU]
553096
553181
+
Leu
CAG
[ENA]
¡û
>W1710083055
BDIY01000009
Alphaproteobacteria
Roseovarius sp. A-2 [BDIY]
93901
93986
+
Leu
CAG
[ENA]
¡û
>W1710518946
FNEJ01000001
Alphaproteobacteria
Salipiger marinus marina [FNEJ]
359820
359905
+
Leu
CAG
[ENA]
¡û
>W1710539027
FNUZ01000010
Alphaproteobacteria
Thalassococcus halodurans [FNUZ]
17387
17302
-
Leu
CAG
[ENA]
¡û
>W1710543727
FOAG01000002
Alphaproteobacteria
Roseovarius azorensis [FOAG]
296085
296170
+
Leu
CAG
[ENA]
¡û
>W1710545524
FOBO01000003
Alphaproteobacteria
Roseovarius tolerans [FOBO]
13378
13293
-
Leu
CAG
[ENA]
¡û
>W1710555874
FOJU01000005
Alphaproteobacteria
Poseidonocella pacifica [FOJU]
382975
382890
-
Leu
CAG
[ENA]
¡û
>W1710606906
FWYD01000017
Alphaproteobacteria
Primorskyibacter flagellatus [FWYD]
10341
10256
-
Leu
CAG
[ENA]
¡û
>W1710616757
JFKD01000027
Alphaproteobacteria
Marivita cryptomonadis [JFKD]
3749
3664
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK