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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89128 (57 seq.)
>W1710885534
LMXH01000001
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
696327
696412
+
Tyr
GTA
[ENA]
¡û
>W1710885556
LMXH01000003
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
31928
32013
+
Tyr
GTA
[ENA]
¡û
>W1711010065
LQRA01000044
Bacillota
Paenibacillus elgii [LQRA]
793
878
+
Tyr
GTA
[ENA]
¡û
>W1711010075
LQRA01000060
Bacillota
Paenibacillus elgii [LQRA]
88967
88882
-
Tyr
GTA
[ENA]
¡û
>W1711010093
LQRA01000076
Bacillota
Paenibacillus elgii [LQRA]
414
499
+
Tyr
GTA
[ENA]
¡û
>W131235819
AULW01000017
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
745
830
+
Tyr
GTA
[ENA]
¡û
>W1711677697
MRTR01000026
Bacillota
Paenibacillus macerans [MRTR]
647
732
+
Tyr
GTA
[ENA]
¡û
>W141251583
CBQR020000138
Bacillota
Gorillibacterium massiliense G5 [CBQR]
752
837
+
Tyr
GTA
[ENA]
¡û
>W141251607
CBQR020000167
Bacillota
Gorillibacterium massiliense G5 [CBQR]
858
943
+
Tyr
GTA
[ENA]
¡û
>W141252020
CBRA020000145
Bacillota
Paenibacillus sp. P22 [CBRA]
17579
17494
-
Tyr
GTA
[ENA]
¡û
>WENV183727001
PJTO01001563
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
4788
4703
-
Tyr
GTA
[ENA]
¡û
>WENV183727243
PJTO01016840
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
355
270
-
Tyr
GTA
[ENA]
¡û
>WENV183729311
PJTQ01021098
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
555
640
+
Tyr
GTA
[ENA]
¡û
>WENV170707990
LNAP01043150
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1474
1389
-
Tyr
GTA
[ENA]
¡û
>W141462433
JFHT01000128
Bacillota
Paenibacillus darwinianus [JFHT]
65
150
+
Tyr
GTA
[ENA]
¡û
>W09125289
ACIH01000138
Bacillota
Paenibacillus sp. oral taxon 786 oral taxon 786 str. D14 [ACIH]
69873
69788
-
Tyr
GTA
[ENA]
¡û
>W1910154935
BIMD01000073
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
17473
17388
-
Tyr
GTA
[ENA]
¡û
>W1910155275
BIML01000016
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
44783
44698
-
Tyr
GTA
[ENA]
¡û
>W1910155292
BIML01000034
Bacillota
Paenibacillus xylaniclasticus NBRC 106381 [BIML]
516
601
+
Tyr
GTA
[ENA]
¡û
>W1910155335
BIMM01000051
Bacillota
Paenibacillus pasadenensis NBRC 101214 [BIMM]
39204
39119
-
Tyr
GTA
[ENA]
¡û
>W1910891835
NFEZ01000004
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
235131
235216
+
Tyr
GTA
[ENA]
¡û
>W1911075516
NMUQ01000002
Bacillota
Paenibacillus herberti R33 [NMUQ]
1156878
1156963
+
Tyr
GTA
[ENA]
¡û
>W1810701686
QMFA01000007
Bacillota
Paenibacillus sp. YN15 [QMFA]
39071
39156
+
Tyr
GTA
[ENA]
¡û
>W1810701687
QMFA01000007
Bacillota
Paenibacillus sp. YN15 [QMFA]
39268
39353
+
Tyr
GTA
[ENA]
¡û
>W1810701744
QMFA01000080
Bacillota
Paenibacillus sp. YN15 [QMFA]
560
645
+
Tyr
GTA
[ENA]
¡û
>W2010087870
BIMD01000073
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
17473
17388
-
Tyr
GTA
[ENA]
¡û
>W2010088270
BIMM01000051
Bacillota
Paenibacillus pasadenensis NBRC 101214 [BIMM]
39204
39119
-
Tyr
GTA
[ENA]
¡û
>W2010269510
CABKSB020000002
Bacillota
Paenibacillaceae bacterium [CABKSB]
1022
1107
+
Tyr
GTA
[ENA]
¡û
>W2010269526
CABKSB020000002
Bacillota
Paenibacillaceae bacterium [CABKSB]
448109
448194
+
Tyr
GTA
[ENA]
¡û
>W2010274452
CABKVL020000016
Bacillota
Paenibacillus rubinfantis [CABKVL]
339637
339552
-
Tyr
GTA
[ENA]
¡û
>W2010274468
CABKVL020000018
Bacillota
Paenibacillus rubinfantis [CABKVL]
872
957
+
Tyr
GTA
[ENA]
¡û
>W2010274575
CABKVN020000005
Bacillota
Paenibacillus senegalimassiliensis [CABKVN]
910
995
+
Tyr
GTA
[ENA]
¡û
>W2010274597
CABKVN020000012
Bacillota
Paenibacillus senegalimassiliensis [CABKVN]
4018
4103
+
Tyr
GTA
[ENA]
¡û
>W2010956705
NFEZ01000004
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
235131
235216
+
Tyr
GTA
[ENA]
¡û
>W2011004710
NMUQ01000002
Bacillota
Paenibacillus herberti R33 [NMUQ]
1156878
1156963
+
Tyr
GTA
[ENA]
¡û
>W2011393221
RCCY01000014
Bacillota
Paenibacillus sp. RU15A [RCCY]
338968
338883
-
Tyr
GTA
[ENA]
¡û
>W2110024198
BMGR01000007
Bacillota
Paenibacillus abyssi CGMCC 1.12987 [BMGR]
654
739
+
Tyr
GTA
[ENA]
¡û
>W2110068555
BOVJ01000141
Bacillota
Paenibacillus cisolokensis LC2-13A [BOVJ]
499
584
+
Tyr
GTA
[ENA]
¡û
>W2110130771
CAJVCE010000014
Bacillota
Paenibacillus sp. JJ-447 [CAJVCE]
171851
171766
-
Tyr
GTA
[ENA]
¡û
>W2110130842
CAJVCE010000059
Bacillota
Paenibacillus sp. JJ-447 [CAJVCE]
1457
1541
+
Tyr
GTA
[ENA]
¡û
>W2110130858
CAJVCE010000068
Bacillota
Paenibacillus sp. JJ-447 [CAJVCE]
5077
4992
-
Tyr
GTA
[ENA]
¡û
>W2110284028
JACXIZ010000039
Bacillota
Paenibacillus sp. IB182496 [JACXIZ]
590
675
+
Tyr
GTA
[ENA]
¡û
>W2110587776
JAHBAZ010000047
Bacillota
Paenibacillus sp. CGMCC 1.18879 [JAHBAZ]
92611
92526
-
Tyr
GTA
[ENA]
¡û
>W2110621671
JAHLPR010000007
Bacillota
Paenibacillus sp. MSJ-34 [JAHLPR]
1050
1135
+
Tyr
GTA
[ENA]
¡û
>W2110621728
JAHLPR010000129
Bacillota
Paenibacillus sp. MSJ-34 [JAHLPR]
354
269
-
Tyr
GTA
[ENA]
¡û
>W2110664124
JAHZIJ010000029
Bacillota
Paenibacillus oenotherae DT7-4 [JAHZIJ]
669
754
+
Tyr
GTA
[ENA]
¡û
>C211380387
CP080545
Bacillota
Paenibacillus sp. sptzw28 [CP080545]
92165
92080
-
Tyr
GTA
-
¡û
>C241024555
CP022655
Bacillota
Paenibacillus sp. RUD330 [CP022655]
276367
276452
+
Tyr
GTA
-
¡û
>C241101141
CP045802
Bacillota
Paenibacillus sp. B01 [CP045802]
289569
289654
+
Tyr
GTA
-
¡û
>C241150005
CP051428
Bacillota
Paenibacillus albicereus UniB2 [CP051428]
290465
290550
+
Tyr
GTA
-
¡û
>W1511541229
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
3988288
3988373
+
Tyr
GTA
[ENA]
¡û
>C161058364
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
194667
194582
-
Tyr
GTA
[Ensembl]
¡û
>W1710511803
FMYY01000001
Bacillota
Paenibacillus sp. cl123 [FMYY]
10
95
+
Tyr
GTA
[ENA]
¡û
>W1710511823
FMYY01000009
Bacillota
Paenibacillus sp. cl123 [FMYY]
224686
224601
-
Tyr
GTA
[ENA]
¡û
>W1710511859
FMYY01000020
Bacillota
Paenibacillus sp. cl123 [FMYY]
122035
121950
-
Tyr
GTA
[ENA]
¡û
>W1710595453
FTLY01000005
Bacillota
Paenibacillus sp. RU4X [FTLY]
338967
338882
-
Tyr
GTA
[ENA]
¡û
>W1710597351
FTND01000005
Bacillota
Paenibacillus sp. RU4T [FTND]
338967
338882
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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