This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89137 (34 seq.)
>C012981
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
1141526
1141611
+
Leu
GAG
[Ensembl]
¡û
>WENV180042131
LNFX01000311
[LNFX] marine sediment metagenome; antarctic beach sand mud
13666
13751
+
Leu
GAG
[ENA]
¡û
>WENV180042204
LNFX01004546
[LNFX] marine sediment metagenome; antarctic beach sand mud
271
186
-
Leu
GAG
[ENA]
¡û
>W141191379
AYOZ01000004
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
74233
74148
-
Leu
GAG
[ENA]
¡û
>W141284679
JAMB01000008
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
63182
63097
-
Leu
GAG
[ENA]
¡û
>C191039773
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
816630
816715
+
Leu
GAG
-
¡û
>W09106433
AAVH01000001
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
1136098
1136183
+
Leu
GAG
[ENA]
¡û
>W1910584834
JYBL01000010
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
141351
141436
+
Leu
GAG
[ENA]
¡û
>W1910914885
NHTT01000011
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
49023
48938
-
Leu
GAG
[ENA]
¡û
>W1810606233
QGOK01000008
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
109086
109001
-
Leu
GAG
[ENA]
¡û
>W1810625211
QHJF01000002
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
103440
103355
-
Leu
GAG
[ENA]
¡û
>W1810676266
QKLW01000004
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
53126
53211
+
Leu
GAG
[ENA]
¡û
>W1810721703
QNSE01000007
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
55104
55019
-
Leu
GAG
[ENA]
¡û
>W1810759683
QPJQ01000005
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
25348
25433
+
Leu
GAG
[ENA]
¡û
>W2010584376
JABAEK010000006
Gammaproteobacteria
Marinomonas sp. M1K-6 [JABAEK]
97113
97028
-
Leu
GAG
[ENA]
¡û
>W2010764337
JYBL01000010
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
141351
141436
+
Leu
GAG
[ENA]
¡û
>W2010967745
NHTT01000011
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
49023
48938
-
Leu
GAG
[ENA]
¡û
>W2011222076
PTXN01000016
Gammaproteobacteria
Marinomonas sp. UCMA 3892 UCMA3892 [PTXN]
50536
50621
+
Leu
GAG
[ENA]
¡û
>W2011431015
RIZG01000001
Gammaproteobacteria
Marinomonas hwangdonensis HDW-15 [RIZG]
241578
241663
+
Leu
GAG
[ENA]
¡û
>W2011431124
RIZH01000009
Gammaproteobacteria
Marinomonas rhizomae IVIA-Po-145 [RIZH]
165781
165866
+
Leu
GAG
[ENA]
¡û
>W2012132074
VSRV01000001
Gammaproteobacteria
Marinomonas sp. IMCC 4694 [VSRV]
774317
774402
+
Leu
GAG
[ENA]
¡û
>W2110030184
BMLJ01000001
Gammaproteobacteria
Marinomonas arctica CGMCC 1.6498 [BMLJ]
62386
62471
+
Leu
GAG
[ENA]
¡û
>W2110286836
JACYFC010000001
Gammaproteobacteria
Marinomonas colpomeniae SM2066 [JACYFC]
282993
283078
+
Leu
GAG
[ENA]
¡û
>W2110428830
JAEMNX010000003
Gammaproteobacteria
Marinomonas sp. C1424 [JAEMNX]
78124
78039
-
Leu
GAG
[ENA]
¡û
>W2110571013
JAGSSV010000001
Gammaproteobacteria
Marinomonas vulgaris A79 [JAGSSV]
238788
238703
-
Leu
GAG
[ENA]
¡û
>W2110617706
JAHLLW010000010
Gammaproteobacteria
Marinomonas sp. E165 [JAHLLW]
49043
48958
-
Leu
GAG
[ENA]
¡û
>C211142024
CP061081
Gammaproteobacteria
Marinomonas arctica BSI20414 [CP061081]
3440986
3440901
-
Leu
GAG
-
¡û
>C211273565
CP070273
Gammaproteobacteria
Marinomonas foliarum JZW [CP070273]
2894549
2894634
+
Leu
GAG
-
¡û
>W2110716880
JAJATW010000003
Gammaproteobacteria
Marinomonas sp. E8 [JAJATW]
207657
207572
-
Leu
GAG
[ENA]
¡û
>C231129700
CP073013
Gammaproteobacteria
Marinomonas profundi M1K-6 [CP073013]
2402402
2402487
+
Leu
GAG
-
¡û
>C231130921
CP073343
Gammaproteobacteria
Marinomonas rhizomae MB12-11 [CP073343]
3504605
3504520
-
Leu
GAG
-
¡û
>C241010780
AP027271
Gammaproteobacteria
Marinomonas pontica 200518_36 [AP027271]
2754402
2754317
-
Leu
GAG
-
¡û
>C241166540
CP054301
Gammaproteobacteria
Marinomonas primoryensis MPKMM3633 [CP054301]
745584
745669
+
Leu
GAG
-
¡û
>W1710583966
FQVF01000012
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
113268
113353
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK