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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89419 (64 seq.)
>W131161752
AQXZ01000014
Actinomycetota
Smaragdicoccus niigatensis DSM 44881 [AQXZ]
102498
102413
-
Leu
CAG
[ENA]
¡û
>C171068212
CP017839
Actinomycetota
Nocardia seriolae EM150506 [CP017839]
669551
669634
+
Leu
CAG
-
¡û
>WENV016790
AACY020470022
Marine microbial communities from Global Ocean Sampling (GOS)
1144
1229
+
Leu
CAG
[ENA]
>WENV180110730
OAPN01005082
[OAPN] marine metagenome; 2011
210
293
+
Leu
CAG
[ENA]
¡û
>WENV180114978
OAPS01086965
[OAPS] marine metagenome; sea water
118
35
-
Leu
CAG
[ENA]
¡û
>WENV016852
AACY020470907
Marine microbial communities from Global Ocean Sampling (GOS)
1792
1707
-
Leu
CAG
[ENA]
>WENV180377321
OBON01010691
[OBON] marine metagenome; sea water
568
651
+
Leu
CAG
[ENA]
¡û
>WENV180392648
OBPP01001054
[OBPP] marine metagenome; ENVO:00002042
366
449
+
Leu
CAG
[ENA]
¡û
>WENV180393655
OBPR01000258
[OBPR] marine metagenome; ENVO:00002042
2488
2405
-
Leu
CAG
[ENA]
¡û
>WENV181368985
OFQN01007451
[OFQN] freshwater metagenome; Freshwater Lake
281
198
-
Leu
CAG
[ENA]
¡û
>WENV181369397
OFQP01001414
[OFQP] freshwater metagenome; Freshwater Lake
1062
979
-
Leu
CAG
[ENA]
¡û
>WENV181370762
OFQT01008333
[OFQT] freshwater metagenome; Freshwater Lake
387
304
-
Leu
CAG
[ENA]
¡û
>WENV181376897
OFRA01000508
[OFRA] wastewater metagenome; Lake Maggiore Verbania
5923
5840
-
Leu
CAG
[ENA]
¡û
>WENV181377671
OFRA01024201
[OFRA] wastewater metagenome; Lake Maggiore Verbania
815
732
-
Leu
CAG
[ENA]
¡û
>WENV181377872
OFRA01040371
[OFRA] wastewater metagenome; Lake Maggiore Verbania
31
114
+
Leu
CAG
[ENA]
¡û
>WENV181384483
OFRI01001570
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1156
1239
+
Leu
CAG
[ENA]
¡û
>WENV181385170
OFRI01043703
[OFRI] wastewater metagenome; Exp Tend VB 90WW
679
596
-
Leu
CAG
[ENA]
¡û
>WENV181386248
OFRL01001567
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
3705
3622
-
Leu
CAG
[ENA]
¡û
>WENV181400075
OFSF01001234
[OFSF] wastewater metagenome; Exp Tend VB 100WW
6755
6672
-
Leu
CAG
[ENA]
¡û
>WENV170124176
CENO01113637
[CENO] marine metagenome genome assembly TARA_033_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
902
987
+
Leu
CAG
[ENA]
¡û
>WENV170223020
CEQD01094359
[CEQD] marine metagenome genome assembly TARA_042_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
207
122
-
Leu
CAG
[ENA]
¡û
>WENV170259921
CEQY01309375
[CEQY] marine metagenome genome assembly TARA_070_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
400
315
-
Leu
CAG
[ENA]
¡û
>WENV170606412
FUWD010666805
[FUWD] metagenome; unknown
135
52
-
Leu
CAG
[ENA]
¡û
>WENV170619234
FUWD013006123
[FUWD] metagenome; unknown
509
424
-
Leu
CAG
[ENA]
¡û
>WENV170619235
FUWD013006124
[FUWD] metagenome; unknown
115
30
-
Leu
CAG
[ENA]
¡û
>WENV170622655
FUWD013114576
[FUWD] metagenome; unknown
182
267
+
Leu
CAG
[ENA]
¡û
>WENV170630869
FUWD013328394
[FUWD] metagenome; unknown
182
267
+
Leu
CAG
[ENA]
¡û
>WENV021582
AACY020581693
Marine microbial communities from Global Ocean Sampling (GOS)
459
544
+
Leu
CAG
[ENA]
>WENV021860
AACY020602155
Marine microbial communities from Global Ocean Sampling (GOS)
648
563
-
Leu
CAG
[ENA]
>WENV024156
AACY020784894
Marine microbial communities from Global Ocean Sampling (GOS)
151
66
-
Leu
CAG
[ENA]
>WENV024758
AACY020834361
Marine microbial communities from Global Ocean Sampling (GOS)
333
418
+
Leu
CAG
[ENA]
>WENV025651
AACY020904100
Marine microbial communities from Global Ocean Sampling (GOS)
80
165
+
Leu
CAG
[ENA]
>WENV029310
AACY021188031
Marine microbial communities from Global Ocean Sampling (GOS)
760
845
+
Leu
CAG
[ENA]
>W2011401265
RCNK01000002
Actinomycetota
Nocardia seriolae HSY-NS02 [RCNK]
72646
72729
+
Leu
CAG
[ENA]
¡û
>W2011833671
UGRY01000002
Actinomycetota
Nocardia otitidiscaviarum NCTC1934 [UGRY]
1934073
1934158
+
Leu
CAG
[ENA]
¡û
>W2012379251
WMKB01000001
Actinomycetota
Nocardia seriolae VT_45 [WMKB]
10550
10633
+
Leu
CAG
[ENA]
¡û
>W2012379417
WMKE01000033
Actinomycetota
Nocardia seriolae KH_11 [WMKE]
10637
10720
+
Leu
CAG
[ENA]
¡û
>W2012379465
WMKF01000003
Actinomycetota
Nocardia seriolae KH_21 [WMKF]
72571
72654
+
Leu
CAG
[ENA]
¡û
>W2012426195
WRPP01000004
Actinomycetota
Nocardia sp. ET3-3 [WRPP]
326660
326577
-
Leu
CAG
[ENA]
¡û
>W2110336246
JADLSB010000006
Actinomycetota
Nocardia otitidiscaviarum N-42 [JADLSB]
203506
203591
+
Leu
CAG
[ENA]
¡û
>W2110445965
JAERRJ010000001
Actinomycetota
Nocardia sp. 2 LPG-2 [JAERRJ]
554253
554338
+
Leu
CAG
[ENA]
¡û
>C201181110
CP046452
Actinomycetota
Corynebacterium sp. 1959 [CP046452]
38890
38973
+
Leu
CAG
-
¡û
>C211123366
CP059399
Actinomycetota
Nocardia sp. WCH-YHL-001 [CP059399]
314542
314627
+
Leu
CAG
-
¡û
>C211330212
CP074371
Actinomycetota
Nocardia tengchongensis CFH S0057 [CP074371]
1343497
1343582
+
Leu
CAG
-
¡û
>C241059642
CP041695
Actinomycetota
Nocardia otitidiscaviarum NEB252 [CP041695]
6969619
6969534
-
Leu
CAG
-
¡û
>C10112458
CP001958
Actinomycetota
Segniliparus rotundus DSM 44985 [CP001958]
359963
360048
+
Leu
CAG
[Ensembl]
¡û
>W11109741
ACZI01000142
Actinomycetota
Segniliparus rugosus ATCC BAA-974 [ACZI]
6879
6964
+
Leu
CAG
[ENA]
¡û
>WENV048929
AACY022760137
Marine microbial communities from Global Ocean Sampling (GOS)
432
517
+
Leu
CAG
[ENA]
>WENV049183
AACY022774650
Marine microbial communities from Global Ocean Sampling (GOS)
362
277
-
Leu
CAG
[ENA]
>WENV058676
AACY023338512
Marine microbial communities from Global Ocean Sampling (GOS)
717
630
-
Leu
CAG
[ENA]
>WENV058979
AACY023349483
Marine microbial communities from Global Ocean Sampling (GOS)
1324
1239
-
Leu
CAG
[ENA]
>WENV059049
AACY023352292
Marine microbial communities from Global Ocean Sampling (GOS)
1056
971
-
Leu
CAG
[ENA]
>WENV061583
AACY023435006
Marine microbial communities from Global Ocean Sampling (GOS)
1151
1066
-
Leu
CAG
[ENA]
>W121125254
BAFX01000001
Actinomycetota
Nocardia concava NBRC 100430 [BAFX]
21847
21932
+
Leu
CAG
[ENA]
¡û
>W121125572
BAGD01000019
Actinomycetota
Nocardia otitidiscaviarum NBRC 14405 [BAGD]
166456
166541
+
Leu
CAG
[ENA]
¡û
>W1610597657
LFFE01000003
Actinomycetota
Actinobacteria bacterium casp-actino5 [LFFE]
29320
29235
-
Leu
CAG
[ENA]
¡û
>W1610625397
LIAO01000165
Actinomycetota
Acidimicrobium sp. BACL27 MAG-120823-bin4 [LIAO]
2809
2724
-
Leu
CAG
[ENA]
¡û
>W1610625442
LIAP01000317
Actinomycetota
Acidimicrobium sp. BACL17 MAG-120924-bin0 [LIAP]
1260
1345
+
Leu
CAG
[ENA]
¡û
>W1610625700
LIAZ01000062
Actinomycetota
Acidimicrobium sp. BACL17 MAG-120823-bin42 [LIAZ]
751
666
-
Leu
CAG
[ENA]
¡û
>WENV076500
AACY024099989
Marine microbial communities from Global Ocean Sampling (GOS)
1023
938
-
Leu
CAG
[ENA]
>W1710718904
LFFE01000003
Actinomycetota
Actinobacteria bacterium casp-actino5 [LFFE]
29320
29235
-
Leu
CAG
[ENA]
¡û
>W1710756524
LIAO01000165
Actinomycetota
Acidimicrobium sp. BACL27 MAG-120823-bin4 [LIAO]
2809
2724
-
Leu
CAG
[ENA]
¡û
>W1710756569
LIAP01000317
Actinomycetota
Acidimicrobium sp. BACL17 MAG-120924-bin0 [LIAP]
1260
1345
+
Leu
CAG
[ENA]
¡û
>W1710756827
LIAZ01000062
Actinomycetota
Acidimicrobium sp. BACL17 MAG-120823-bin42 [LIAZ]
751
666
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK