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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.89483 (29 seq.)
>WENV180063485
MPLX02356140
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
216
131
-
Tyr
GTA
[ENA]
¡û
>WENV180065630
MPLY02076442
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
667
752
+
Tyr
GTA
[ENA]
¡û
>WENV180067626
MPLZ02006917
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
191
276
+
Tyr
GTA
[ENA]
¡û
>WENV180068128
MPLZ02032210
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
181
96
-
Tyr
GTA
[ENA]
¡û
>WENV180069377
MPLZ02104554
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
1141
1226
+
Tyr
GTA
[ENA]
¡û
>WENV180069412
MPLZ02106555
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
93
8
-
Tyr
GTA
[ENA]
¡û
>WENV180071545
MPLZ02243017
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
661
576
-
Tyr
GTA
[ENA]
¡û
>WENV180075688
MPMA02226693
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
606
691
+
Tyr
GTA
[ENA]
¡û
>WENV180075954
MPMA02247022
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
1361
1446
+
Tyr
GTA
[ENA]
¡û
>WENV180075966
MPMA02247702
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
357
272
-
Tyr
GTA
[ENA]
¡û
>WENV180076119
MPMA02259644
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
916
1001
+
Tyr
GTA
[ENA]
¡û
>WENV180078155
MPMB02088096
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
423
508
+
Tyr
GTA
[ENA]
¡û
>WENV180088002
MPMF02007657
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
1296
1211
-
Tyr
GTA
[ENA]
¡û
>WENV181315901
OFJR01002371
[OFJR] marine metagenome; seawater
442
527
+
Tyr
GTA
[ENA]
¡û
>WENV181316497
OFJU01006681
[OFJU] marine metagenome; seawater
274
189
-
Tyr
GTA
[ENA]
¡û
>WENV183798121
PVBE010391391
[PVBE] marine metagenome; water
153
68
-
Tyr
GTA
[ENA]
¡û
>WENV183804754
PVBE010956698
[PVBE] marine metagenome; water
683
598
-
Tyr
GTA
[ENA]
¡û
>WENV170154147
CEOF01175870
[CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
673
588
-
Tyr
GTA
[ENA]
¡û
>WENV170321570
CESR01064339
[CESR] marine metagenome genome assembly TARA_100_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
196
111
-
Tyr
GTA
[ENA]
¡û
>WENV170382792
CETX01047111
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
341
426
+
Tyr
GTA
[ENA]
¡û
>WENV170460865
CEVC01172372
[CEVC] marine metagenome genome assembly TARA_125_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
42080
41995
-
Tyr
GTA
[ENA]
¡û
>WENV170601125
FUWD010157330
[FUWD] metagenome; unknown
230
315
+
Tyr
GTA
[ENA]
¡û
>WENV170958935
MKWU01002477
[MKWU] sponge metagenome;
523
438
-
Tyr
GTA
[ENA]
¡û
>WENV029199
AACY021180251
Marine microbial communities from Global Ocean Sampling (GOS)
331
416
+
Tyr
GTA
[ENA]
>C211031029
CP018227
Alphaproteobacteria
Kordiimonadales bacterium IMCC3096 [CP018227]
965852
965767
-
Tyr
GTA
-
¡û
>C241250161
CP123781
Alphaproteobacteria
Minwuia sp. IMCC3009 [CP123781]
2989820
2989735
-
Tyr
GTA
-
¡û
>C241250208
CP123782
Alphaproteobacteria
Minwuia sp. IMCC3060 [CP123782]
3042543
3042458
-
Tyr
GTA
-
¡û
>C241250240
CP123783
Alphaproteobacteria
Minwuia sp. IMCC3077 [CP123783]
2354586
2354671
+
Tyr
GTA
-
¡û
>C241250297
CP123784
Alphaproteobacteria
Minwuia sp. IMCC4030 [CP123784]
3965896
3965811
-
Tyr
GTA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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