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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90121 (15 seq.)
>C181143153
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
939756
939840
+
Leu
TAG
-
¡û
>C191013607
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
66138
66222
+
Leu
TAG
-
¡û
>W1810784484
QRAS01000002
Bacillota
Weissella soli CECT 7031 [QRAS]
167145
167061
-
Leu
TAG
[ENA]
¡û
>W2010104399
BJYO01000003
Bacillota
Weissella soli NBRC 106074 [BJYO]
170168
170252
+
Leu
TAG
[ENA]
¡û
>W2010581023
JAAXPL010000003
Bacillota
Weissella soli CCUG 46608 [JAAXPL]
49802
49886
+
Leu
TAG
[ENA]
¡û
>C211059767
CP043431
Bacillota
Weissella koreensis SK [CP043431]
898406
898490
+
Leu
TAG
-
¡û
>C211137926
CP060724
Bacillota
Weissella diestrammenae KACC 16890 [CP060724]
846327
846411
+
Leu
TAG
-
¡û
>C241138621
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
1606137
1606053
-
Leu
TAG
-
¡û
>C241378268
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
917741
917825
+
Leu
TAG
-
¡û
>W2310015975
BQJZ01000001
Bacillota
Weissella soli DB-2 [BQJZ]
163320
163404
+
Leu
TAG
[ENA]
¡û
>WENV11100325
AEKF01000075
Food metagenome, Jonggazip commercial cabbage kimchi
1387
1471
+
Leu
TAG
[ENA]
¡û
>C11123737
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
875269
875353
+
Leu
TAG
[Ensembl]
¡û
>W121082002
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
47995
48079
+
Leu
TAG
[ENA]
¡û
>W1610528858
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
12924
13008
+
Leu
TAG
[ENA]
¡û
>W1710630448
JQBP01000004
Bacillota
Weissella kandleri [JQBP]
12924
13008
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK