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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90183 (68 seq.)
>A171003595
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
2992890
2992806
-
Leu
TAA
-
¡û
>A171004939
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
2119034
2119119
+
Leu
TAA
-
¡û
>A171004991
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
2102985
2103070
+
Leu
TAA
-
¡û
>A171005043
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
2217807
2217891
+
Leu
TAA
-
¡û
>A171005113
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
1776879
1776795
-
Leu
TAA
-
¡û
>A171005174
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
1649404
1649319
-
Leu
TAA
-
¡û
>A171005254
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
2712066
2712150
+
Leu
TAA
-
¡û
>WENV180345742
OBLN01003951
[OBLN] sediment metagenome; sediment
1732
1648
-
Leu
TAA
[ENA]
¢þ
>At1550
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
3543040
3542956
-
Leu
TAA
[Ensembl]
¡û
>WENV170725601
LSQX01348985
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
9409
9496
+
Leu
TAA
[ENA]
¢þ
>W1910569245
JJOR01000086
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
16445
16530
+
Leu
TAA
[ENA]
¡û
>W1910569307
JJOS01000079
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
26831
26916
+
Leu
TAA
[ENA]
¡û
>W1910569372
JJOT01000107
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
22711
22626
-
Leu
TAA
[ENA]
¡û
>W1910569418
JJOU01000181
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
15590
15505
-
Leu
TAA
[ENA]
¡û
>W1910569684
JJPA01000016
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
93865
93780
-
Leu
TAA
[ENA]
¡û
>W1910569750
JJPB01000075
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
16550
16635
+
Leu
TAA
[ENA]
¡û
>W1910569831
JJPC01000153
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
15454
15539
+
Leu
TAA
[ENA]
¡û
>W1910569859
JJPD01000121
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
37032
36947
-
Leu
TAA
[ENA]
¡û
>W1910569911
JJPE01000068
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
22619
22534
-
Leu
TAA
[ENA]
¡û
>W1910569981
JJPF01000118
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
22619
22534
-
Leu
TAA
[ENA]
¡û
>W1910569999
JJPG01000038
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
21527
21442
-
Leu
TAA
[ENA]
¡û
>W1910570087
JJPH01000130
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
22619
22534
-
Leu
TAA
[ENA]
¡û
>W1910570116
JJPI01000066
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
31090
31175
+
Leu
TAA
[ENA]
¡û
>W1910570172
JJPJ01000060
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
50080
50165
+
Leu
TAA
[ENA]
¡û
>W1910570200
JJPK01000014
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
363669
363754
+
Leu
TAA
[ENA]
¡û
>W1910570250
JJPL01000040
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
26175
26260
+
Leu
TAA
[ENA]
¡û
>W1910570319
JJPM01000163
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
8238
8323
+
Leu
TAA
[ENA]
¡û
>W1910570380
JJPN01000127
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
58702
58617
-
Leu
TAA
[ENA]
¡û
>W1910570412
JJPO01000031
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
21587
21502
-
Leu
TAA
[ENA]
¡û
>W1910570472
JJPP01000077
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
15725
15810
+
Leu
TAA
[ENA]
¡û
>W1910570538
JJPQ01000133
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
58747
58662
-
Leu
TAA
[ENA]
¡û
>W1910570568
JJPR01000076
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
285
200
-
Leu
TAA
[ENA]
¡û
>W1910570606
JJPS01000053
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
285
200
-
Leu
TAA
[ENA]
¡û
>W1910570668
JJPT01000066
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
6954
7039
+
Leu
TAA
[ENA]
¡û
>W1910570728
JJPU01000133
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
32421
32506
+
Leu
TAA
[ENA]
¡û
>W1910570753
JJPV01000017
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
49931
50016
+
Leu
TAA
[ENA]
¡û
>W1910570836
JJPW01000064
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
31300
31385
+
Leu
TAA
[ENA]
¡û
>W1910570856
JJPX01000026
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
285
200
-
Leu
TAA
[ENA]
¡û
>W1910570911
JJPY01000029
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
58707
58622
-
Leu
TAA
[ENA]
¡û
>W1910570987
JJPZ01000129
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
13076
12991
-
Leu
TAA
[ENA]
¡û
>W1910571025
JJQA01000085
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
153216
153131
-
Leu
TAA
[ENA]
¡û
>W1910571086
JJQB01000104
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
56277
56192
-
Leu
TAA
[ENA]
¡û
>W1910571132
JJQC01000085
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
32581
32496
-
Leu
TAA
[ENA]
¡û
>W1910571196
JJQD01000185
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
2839
2754
-
Leu
TAA
[ENA]
¡û
>W1910571213
JJQE01000070
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
22713
22628
-
Leu
TAA
[ENA]
¡û
>W1910571269
JJQF01000040
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
21623
21538
-
Leu
TAA
[ENA]
¡û
>W1910571344
JJQG01000125
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
173009
172924
-
Leu
TAA
[ENA]
¡û
>W1910571363
JJQH01000049
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
17475
17560
+
Leu
TAA
[ENA]
¡û
>W1910571435
JJQI01000069
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
103949
103864
-
Leu
TAA
[ENA]
¡û
>W1910571493
JJQJ01000155
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
18971
19056
+
Leu
TAA
[ENA]
¡û
>W1910571548
JJQK01000249
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
9890
9975
+
Leu
TAA
[ENA]
¡û
>W1910571661
JJQM01000123
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
17475
17560
+
Leu
TAA
[ENA]
¡û
>W1910571711
JJQN01000116
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
14116
14201
+
Leu
TAA
[ENA]
¡û
>W1910571782
JJQO01000333
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
17497
17582
+
Leu
TAA
[ENA]
¡û
>W1910571824
JJQP01000163
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
7087
7172
+
Leu
TAA
[ENA]
¡û
>W1910571863
JJQQ01000043
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
14989
14904
-
Leu
TAA
[ENA]
¡û
>W1910571938
JJQR01000108
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
17475
17560
+
Leu
TAA
[ENA]
¡û
>W1910571983
JJQS01000072
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
17475
17560
+
Leu
TAA
[ENA]
¡û
>W1910572042
JJQT01000223
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
17497
17582
+
Leu
TAA
[ENA]
¡û
>W1910572091
JJQU01000156
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
15192
15277
+
Leu
TAA
[ENA]
¡û
>W1910572148
JJQV01000143
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
14212
14127
-
Leu
TAA
[ENA]
¡û
>W1910572193
JJQW01000128
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
6233
6148
-
Leu
TAA
[ENA]
¡û
>W1910572227
JJQX01000144
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
3510
3595
+
Leu
TAA
[ENA]
¡û
>W1910572313
JJQZ01000067
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
17475
17560
+
Leu
TAA
[ENA]
¡û
>W1910572346
JJRA01000009
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
27392
27307
-
Leu
TAA
[ENA]
¡û
>W1910572445
JJRB01000142
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
17333
17418
+
Leu
TAA
[ENA]
¡û
>W1910575050
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
2976514
2976598
+
Leu
TAA
[ENA]
¡û
>W1610046915
BBCW01000062
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
19232
19148
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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